RNA–Protein interactions for RNA: ENST00000589677.5

SMARCA4-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,181 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-214ENST00000589677 NUCKS1Q9H1E3 243 aaKnown RBP16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 FAN1Q9Y2M0 1017 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 HYOU1Q9Y4L1 999 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 CTNNA1P35221 906 aaKnown RBP16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 ZNF131P52739 623 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 LONRF3Q496Y0 759 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 KLHL7Q8IXQ5 586 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 PHACTR3Q96KR7 559 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 CSRNP2Q9H175 543 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 FAM184BQ9ULE4 1060 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 DISP1Q96F81 1524 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 CEP104O60308 925 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 BAG3O95817 575 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 RBM5P52756 815 aaKnown RBP eCLIP16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 RPS6KA1Q15418 735 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 MUM1Q2TAK8 710 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 DESI2Q9BSY9 194 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 PBRM1Q86U86 1689 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 LRRD1A4D1F6 860 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 RPL13P26373 211 aaKnown RBP16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 NBPF14Q5TI25 921 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 SV2BQ7L1I2 683 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 SYCE1Q8N0S2 351 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 CRACR2BQ8N4Y2 399 aaPredicted RBP16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 TRIML1Q8N9V2 468 aa16.3■□□□□ 0.2
SMARCA4-214ENST00000589677 ASIC2Q16515 512 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 PHLDB3Q6NSJ2 640 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 CEP120Q8N960 986 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 RAB17Q9H0T7 212 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 DCAF8L1A6NGE4 600 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 CASQ2O14958 399 aaPredicted RBP16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 JAK2O60674 1132 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 TCP1P17987 556 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 NAPAP54920 295 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 CUL4AQ13619 759 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 CCDC84Q86UT8 332 aaPredicted RBP16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 RAB3IL1Q8TBN0 382 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 PARP2Q9UGN5 583 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 ATP1A2P50993 1020 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 EIF4A2Q14240 407 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 DENND2CQ68D51 928 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 VPS52Q8N1B4 723 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 UBL4BQ8N7F7 174 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 XAGE3Q8WTP9 111 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 PDLIM2Q96JY6 352 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 TACO1Q9BSH4 297 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 TEX13AQ9BXU3 409 aaPredicted RBP16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 IFIH1Q9BYX4 1025 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 NCOA5Q9HCD5 579 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 TMOD3Q9NYL9 352 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 PDE4DQ08499 809 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 TFCP2Q12800 502 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 MAP7D1Q3KQU3 841 aa16.29■□□□□ 0.2
SMARCA4-214ENST00000589677 ABCC2Q92887 1545 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 PEX19P40855 299 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 RNASE9P60153 205 aaKnown RBP16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 ZNF174Q15697 407 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 ZSWIM6Q9HCJ5 1215 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 ABCC4O15439 1325 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 PFKFB1P16118 471 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 CEBPAP49715 358 aaPredicted RBP16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 PLCB3Q01970 1234 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 HOMER3Q9NSC5 361 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 KLHL14Q9P2G3 628 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 CMA1P23946 247 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 KRT24Q2M2I5 525 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 DDX21Q9NR30 783 aaKnown RBP eCLIP16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 STK38LQ9Y2H1 464 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 USH1CQ9Y6N9 552 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 RGS16O15492 202 aaPredicted RBP16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 CYP7A1P22680 504 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 PNOCQ13519 176 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 CCDC170Q8IYT3 715 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 TRIM4Q9C037 500 aa16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 MORC2Q9Y6X9 1032 aaPredicted RBP16.28■□□□□ 0.2
SMARCA4-214ENST00000589677 MYSM1Q5VVJ2 828 aa16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 FAM227BQ96M60 508 aa16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 ANGEL1Q9UNK9 670 aaKnown RBP16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 TRAF5O00463 557 aa16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 CETN3O15182 167 aa16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 EEF2P13639 858 aaKnown RBP16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 FBLN1P23142 703 aa16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 RGS22Q8NE09 1264 aa16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 BICD1Q96G01 975 aa16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 ACTR5Q9H9F9 607 aaPredicted RBP16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 FAM114A2Q9NRY5 505 aa16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 LARSQ9P2J5 1176 aaKnown RBP16.27■□□□□ 0.2
SMARCA4-214ENST00000589677 DNMT1P26358 1616 aaKnown RBP16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 GNA11P29992 359 aa16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 PPP2R5EQ16537 467 aa16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 MTHFSDQ2M296 383 aaKnown RBP16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 COPS6Q7L5N1 327 aa16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 HS2ST1Q7LGA3 356 aa16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 DIS3L2Q8IYB7 885 aaKnown RBP16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 NELFBQ8WX92 580 aa16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 JARID2Q92833 1246 aaPredicted RBP16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 PARD6BQ9BYG5 372 aa16.27■□□□□ 0.19
SMARCA4-214ENST00000589677 NUTM2BA6NNL0 878 aaPredicted RBP16.26■□□□□ 0.19
SMARCA4-214ENST00000589677 NUTM2EB1AL46 878 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms