RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 TACC3Q9Y6A5 838 aa10.29□□□□□ -0.76
SMAD4-206ENST00000588860 DDX60LQ5H9U9 1706 aaKnown RBP10.29□□□□□ -0.76
SMAD4-206ENST00000588860 SALL1Q9NSC2 1324 aa10.29□□□□□ -0.76
SMAD4-206ENST00000588860 ADAMTSL1Q8N6G6 1762 aa10.29□□□□□ -0.76
SMAD4-206ENST00000588860 C6orf229H3BNL8 230 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 H3BQV1 296 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 KDM4AO75164 1064 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 MBD3O95983 291 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 PYGBP11216 843 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 GSTO1P78417 241 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 HMGN5P82970 282 aaKnown RBP10.28□□□□□ -0.76
SMAD4-206ENST00000588860 PPARAQ07869 468 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 TMEM67Q5HYA8 995 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 TMED8Q6PL24 325 aaPredicted RBP10.28□□□□□ -0.76
SMAD4-206ENST00000588860 NFXL1Q6ZNB6 911 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 RAB11FIP4Q86YS3 637 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 SP8Q8IXZ3 490 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 STK11IPQ8N1F8 1099 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 JMYQ8N9B5 988 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 TBC1D16Q8TBP0 767 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 GPT2Q8TD30 523 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 TMEM87BQ96K49 555 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 CRNKL1Q9BZJ0 848 aaKnown RBP10.28□□□□□ -0.76
SMAD4-206ENST00000588860 RNF41Q9H4P4 317 aaPredicted RBP10.28□□□□□ -0.76
SMAD4-206ENST00000588860 GDPD2Q9HCC8 539 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 AATFQ9NY61 560 aaKnown RBP eCLIP10.28□□□□□ -0.76
SMAD4-206ENST00000588860 PODXL2Q9NZ53 605 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 ATP6V0A2Q9Y487 856 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 KIF3AQ9Y496 699 aa10.28□□□□□ -0.76
SMAD4-206ENST00000588860 ZNF646O15015 1829 aaPredicted RBP10.28□□□□□ -0.76
SMAD4-206ENST00000588860 IFIT3O14879 490 aaKnown RBP10.27□□□□□ -0.77
SMAD4-206ENST00000588860 FIBPO43427 364 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 SRGNP10124 158 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 CSPP1Q1MSJ5 1256 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 CAVIN1Q6NZI2 390 aaKnown RBP10.27□□□□□ -0.77
SMAD4-206ENST00000588860 GIMAP6Q6P9H5 292 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 USP48Q86UV5 1035 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 FERMT3Q86UX7 667 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 TMEM87AQ8NBN3 555 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 KLRG1Q96E93 195 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 MASTLQ96GX5 879 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 LY9Q9HBG7 655 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 CD209Q9NNX6 404 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 POLLQ9UGP5 575 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 ANAPC4Q9UJX5 808 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 HPS5Q9UPZ3 1129 aa10.27□□□□□ -0.77
SMAD4-206ENST00000588860 CYP2D7A0A087X1C5 515 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 GOLGA6L3A6NEY3 463 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 CPLX1O14810 134 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 DHX16O60231 1041 aaKnown RBP10.26□□□□□ -0.77
SMAD4-206ENST00000588860 IGSF3O75054 1194 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 IL1R1P14778 569 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 METAP2P50579 478 aaKnown RBP eCLIP10.26□□□□□ -0.77
SMAD4-206ENST00000588860 DNM1Q05193 864 aaKnown RBP10.26□□□□□ -0.77
SMAD4-206ENST00000588860 L1TD1Q5T7N2 865 aaKnown RBP10.26□□□□□ -0.77
SMAD4-206ENST00000588860 C2CD5Q86YS7 1000 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 IGDCC4Q8TDY8 1250 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 SLC16A10Q8TF71 515 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 ZNF622Q969S3 477 aaKnown RBP eCLIP10.26□□□□□ -0.77
SMAD4-206ENST00000588860 NOL10Q9BSC4 688 aaKnown RBP10.26□□□□□ -0.77
SMAD4-206ENST00000588860 SENP2Q9HC62 589 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 ZSWIM5Q9P217 1185 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 RBM27Q9P2N5 1060 aaKnown RBP10.26□□□□□ -0.77
SMAD4-206ENST00000588860 PSME4Q14997 1843 aa10.26□□□□□ -0.77
SMAD4-206ENST00000588860 SCN9AQ15858 1988 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 ERICH2A1L162 156 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 CCDC69A6NI79 296 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 GOLGA8AA7E2F4 631 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 RIMBP2O15034 1052 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 ZBTB43O43298 467 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 PPFIA3O75145 1194 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 GADD45BO75293 160 aaPredicted RBP10.25□□□□□ -0.77
SMAD4-206ENST00000588860 LDHCP07864 332 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 ALDH1B1P30837 517 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 KRT85P78386 507 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 RESTQ13127 1097 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 WTAPQ15007 396 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 SART3Q15020 963 aaKnown RBP10.25□□□□□ -0.77
SMAD4-206ENST00000588860 GRIK5Q16478 980 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 CTR9Q6PD62 1173 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 MICU3Q86XE3 530 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 SH3RF3Q8TEJ3 882 aaPredicted RBP10.25□□□□□ -0.77
SMAD4-206ENST00000588860 ESR2Q92731 530 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 FBXW7Q969H0 707 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 ZKSCAN3Q9BRR0 538 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 UBAC1Q9BSL1 405 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 TMX4Q9H1E5 349 aaPredicted RBP10.25□□□□□ -0.77
SMAD4-206ENST00000588860 ATP8A2Q9NTI2 1148 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 KIF13BQ9NQT8 1826 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 MROH7-TTC4A0A0A0MT08 1334 aa10.25□□□□□ -0.77
SMAD4-206ENST00000588860 FSD2A1L4K1 749 aa10.24□□□□□ -0.77
SMAD4-206ENST00000588860 USP17L12C9JPN9 530 aa10.24□□□□□ -0.77
SMAD4-206ENST00000588860 USP17L21D6R901 530 aa10.24□□□□□ -0.77
SMAD4-206ENST00000588860 SMIM22K7EJ46 135 aa10.24□□□□□ -0.77
SMAD4-206ENST00000588860 CDKL5O76039 1030 aa10.24□□□□□ -0.77
SMAD4-206ENST00000588860 TOMM70O94826 608 aa10.24□□□□□ -0.77
SMAD4-206ENST00000588860 BAG3O95817 575 aa10.24□□□□□ -0.77
SMAD4-206ENST00000588860 SLC3A2P08195 630 aaKnown RBP10.24□□□□□ -0.77
SMAD4-206ENST00000588860 CYP2D6P10635 497 aa10.24□□□□□ -0.77
SMAD4-206ENST00000588860 LIFRP42702 1097 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms