RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 FBXO24O75426 580 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 PAGE1O75459 146 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 BRD1O95696 1058 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 NTF4P34130 210 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 PKN1Q16512 942 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 ZBTB37Q5TC79 503 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 FAM214BQ7L5A3 538 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 KCT2Q8NC54 265 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 TMEM40Q8WWA1 233 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 ELMO3Q96BJ8 720 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 GIPC1O14908 333 aa6.36□□□□□ -1.39
VPS4B-203ENST00000588323 ZP2Q05996 745 aa6.36□□□□□ -1.39
VPS4B-203ENST00000588323 ZNF124Q15973 351 aa6.36□□□□□ -1.39
VPS4B-203ENST00000588323 SCARA3Q6AZY7 606 aa6.36□□□□□ -1.39
VPS4B-203ENST00000588323 KSR1Q8IVT5 923 aa6.36□□□□□ -1.39
VPS4B-203ENST00000588323 ZSCAN29Q8IWY8 852 aaPredicted RBP6.36□□□□□ -1.39
VPS4B-203ENST00000588323 FLAD1Q8NFF5 587 aa6.36□□□□□ -1.39
VPS4B-203ENST00000588323 OSBPL7Q9BZF2 842 aa6.36□□□□□ -1.39
VPS4B-203ENST00000588323 PRDM7Q9NQW5 492 aa6.36□□□□□ -1.39
VPS4B-203ENST00000588323 CLCN7P51798 805 aa6.35□□□□□ -1.39
VPS4B-203ENST00000588323 ATP2B2Q01814 1243 aa6.35□□□□□ -1.39
VPS4B-203ENST00000588323 RING1Q06587 406 aa6.35□□□□□ -1.39
VPS4B-203ENST00000588323 ALG1LQ6GMV1 187 aa6.35□□□□□ -1.39
VPS4B-203ENST00000588323 ARMCX6Q7L4S7 300 aa6.35□□□□□ -1.39
VPS4B-203ENST00000588323 UBE3DQ7Z6J8 389 aa6.35□□□□□ -1.39
VPS4B-203ENST00000588323 SPACA3Q8IXA5 215 aa6.35□□□□□ -1.39
VPS4B-203ENST00000588323 SLC38A3Q99624 504 aa6.35□□□□□ -1.39
VPS4B-203ENST00000588323 PRDM5Q9NQX1 630 aaPredicted RBP6.35□□□□□ -1.39
VPS4B-203ENST00000588323 FMR1Q06787 632 aaKnown RBP eCLIP6.34□□□□□ -1.39
VPS4B-203ENST00000588323 NKPD1Q17RQ9 610 aa6.34□□□□□ -1.39
VPS4B-203ENST00000588323 PCNX4Q63HM2 1172 aa6.34□□□□□ -1.39
VPS4B-203ENST00000588323 ERICH6Q7L0X2 663 aa6.34□□□□□ -1.39
VPS4B-203ENST00000588323 ZSWIM9Q86XI8 627 aa6.34□□□□□ -1.39
VPS4B-203ENST00000588323 ZNF507Q8TCN5 953 aa6.34□□□□□ -1.39
VPS4B-203ENST00000588323 FOXQ1Q9C009 403 aa6.34□□□□□ -1.39
VPS4B-203ENST00000588323 CYP8B1Q9UNU6 501 aa6.34□□□□□ -1.39
VPS4B-203ENST00000588323 SPG7Q9UQ90 795 aa6.34□□□□□ -1.39
VPS4B-203ENST00000588323 DBX1A6NMT0 343 aa6.33□□□□□ -1.4
VPS4B-203ENST00000588323 LRIG2O94898 1065 aa6.33□□□□□ -1.4
VPS4B-203ENST00000588323 CELA3AP09093 270 aa6.33□□□□□ -1.4
VPS4B-203ENST00000588323 KCNMB1Q16558 191 aa6.33□□□□□ -1.4
VPS4B-203ENST00000588323 LCE1DQ5T752 114 aa6.33□□□□□ -1.4
VPS4B-203ENST00000588323 RASIP1Q5U651 963 aa6.33□□□□□ -1.4
VPS4B-203ENST00000588323 ANKRD24Q8TF21 1146 aa6.33□□□□□ -1.4
VPS4B-203ENST00000588323 SETDB2Q96T68 719 aa6.33□□□□□ -1.4
VPS4B-203ENST00000588323 MAPK8IP1Q9UQF2 711 aa6.33□□□□□ -1.4
VPS4B-203ENST00000588323 PITPNM2Q9BZ72 1349 aa6.32□□□□□ -1.4
VPS4B-203ENST00000588323 PRAMEF27A3QJZ7 478 aa6.32□□□□□ -1.4
VPS4B-203ENST00000588323 LRRC10BA6NIK2 292 aa6.32□□□□□ -1.4
VPS4B-203ENST00000588323 EOMESO95936 686 aa6.32□□□□□ -1.4
VPS4B-203ENST00000588323 FAM53CQ9NYF3 392 aa6.32□□□□□ -1.4
VPS4B-203ENST00000588323 FAM8A1Q9UBU6 413 aa6.32□□□□□ -1.4
VPS4B-203ENST00000588323 WWC3Q9ULE0 1092 aa6.32□□□□□ -1.4
VPS4B-203ENST00000588323 TPX2Q9ULW0 747 aaKnown RBP6.32□□□□□ -1.4
VPS4B-203ENST00000588323 FAM155AB1AL88 458 aaPredicted RBP6.31□□□□□ -1.4
VPS4B-203ENST00000588323 USP17L7P0C7H9 530 aa6.31□□□□□ -1.4
VPS4B-203ENST00000588323 INPP5AQ14642 412 aa6.31□□□□□ -1.4
VPS4B-203ENST00000588323 LRFN4Q6PJG9 635 aa6.31□□□□□ -1.4
VPS4B-203ENST00000588323 HDXQ7Z353 690 aa6.31□□□□□ -1.4
VPS4B-203ENST00000588323 FAM84AQ96KN4 292 aa6.31□□□□□ -1.4
VPS4B-203ENST00000588323 ASB16Q96NS5 453 aa6.31□□□□□ -1.4
VPS4B-203ENST00000588323 C12orf49Q9H741 205 aa6.31□□□□□ -1.4
VPS4B-203ENST00000588323 LMCD1Q9NZU5 365 aa6.31□□□□□ -1.4
VPS4B-203ENST00000588323 CTNND2Q9UQB3 1225 aa6.31□□□□□ -1.4
VPS4B-203ENST00000588323 SLITRK5O94991 958 aa6.3□□□□□ -1.4
VPS4B-203ENST00000588323 AFMP43652 599 aa6.3□□□□□ -1.4
VPS4B-203ENST00000588323 MLANAQ16655 118 aa6.3□□□□□ -1.4
VPS4B-203ENST00000588323 SFRP5Q5T4F7 317 aa6.3□□□□□ -1.4
VPS4B-203ENST00000588323 CYFIP1Q7L576 1253 aa6.3□□□□□ -1.4
VPS4B-203ENST00000588323 MIPEPQ99797 713 aa6.3□□□□□ -1.4
VPS4B-203ENST00000588323 CARS2Q9HA77 564 aaKnown RBP6.3□□□□□ -1.4
VPS4B-203ENST00000588323 TTF2Q9UNY4 1162 aaKnown RBP6.3□□□□□ -1.4
VPS4B-203ENST00000588323 ETF1P62495 437 aaKnown RBP6.29□□□□□ -1.4
VPS4B-203ENST00000588323 PTPN11Q06124 597 aaPredicted RBP6.29□□□□□ -1.4
VPS4B-203ENST00000588323 CDKAL1Q5VV42 579 aa6.29□□□□□ -1.4
VPS4B-203ENST00000588323 SV2BQ7L1I2 683 aa6.29□□□□□ -1.4
VPS4B-203ENST00000588323 MFSD4AQ8N468 514 aa6.29□□□□□ -1.4
VPS4B-203ENST00000588323 PLPPR2Q96GM1 343 aa6.29□□□□□ -1.4
VPS4B-203ENST00000588323 HSPA12BQ96MM6 686 aa6.29□□□□□ -1.4
VPS4B-203ENST00000588323 WNT10AQ9GZT5 417 aa6.29□□□□□ -1.4
VPS4B-203ENST00000588323 FBRSQ9HAH7 460 aa6.29□□□□□ -1.4
VPS4B-203ENST00000588323 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS4B-203ENST00000588323 ZNF503-AS2A6NEH8 195 aa6.28□□□□□ -1.4
VPS4B-203ENST00000588323 PRR33A8MZF0 331 aa6.28□□□□□ -1.4
VPS4B-203ENST00000588323 MESP2Q0VG99 397 aa6.28□□□□□ -1.4
VPS4B-203ENST00000588323 SLBPQ14493 270 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS4B-203ENST00000588323 WIPI1Q5MNZ9 446 aaPredicted RBP6.28□□□□□ -1.4
VPS4B-203ENST00000588323 C22orf34Q6ZV56 151 aa6.28□□□□□ -1.4
VPS4B-203ENST00000588323 MFSD2AQ8NA29 543 aa6.28□□□□□ -1.4
VPS4B-203ENST00000588323 BHLHE22Q8NFJ8 381 aaPredicted RBP6.28□□□□□ -1.4
VPS4B-203ENST00000588323 ATP13A1Q9HD20 1204 aa6.28□□□□□ -1.4
VPS4B-203ENST00000588323 SEMA3GQ9NS98 782 aa6.28□□□□□ -1.4
VPS4B-203ENST00000588323 SNCAIPQ9Y6H5 919 aa6.28□□□□□ -1.4
VPS4B-203ENST00000588323 IVNS1ABPQ9Y6Y0 642 aa6.28□□□□□ -1.4
VPS4B-203ENST00000588323 ZNF865P0CJ78 1059 aaPredicted RBP6.27□□□□□ -1.41
VPS4B-203ENST00000588323 CAP2P40123 477 aa6.27□□□□□ -1.41
VPS4B-203ENST00000588323 FGD1P98174 961 aa6.27□□□□□ -1.41
VPS4B-203ENST00000588323 TTBK2Q6IQ55 1244 aa6.27□□□□□ -1.41
VPS4B-203ENST00000588323 ZNF746Q6NUN9 644 aaPredicted RBP6.27□□□□□ -1.41
VPS4B-203ENST00000588323 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms