RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 WTIPA6NIX2 430 aaPredicted RBP7.28□□□□□ -1.24
LIG3-206ENST00000586058 GSG1L2A8MUP6 293 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 CPLX1O14810 134 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 PRC1O43663 620 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 MYO1BO43795 1136 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 POLR3DP05423 398 aaPredicted RBP7.28□□□□□ -1.24
LIG3-206ENST00000586058 HLA-DOAP06340 250 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 PDCP20941 246 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 DYNLL1P63167 89 aaKnown RBP7.28□□□□□ -1.24
LIG3-206ENST00000586058 HDLBPQ00341 1268 aaKnown RBP7.28□□□□□ -1.24
LIG3-206ENST00000586058 DIXDC1Q155Q3 683 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 CCDC178Q5BJE1 867 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 OLFM4Q6UX06 510 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 Q6ZUG5 572 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 STAG1Q8WVM7 1258 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 BRF1Q92994 677 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 TTC14Q96N46 770 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 MTA3Q9BTC8 594 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 TMEM121BQ9BXQ6 578 aaPredicted RBP7.28□□□□□ -1.24
LIG3-206ENST00000586058 EPB41L4AQ9HCS5 686 aaPredicted RBP7.28□□□□□ -1.24
LIG3-206ENST00000586058 LTBP3Q9NS15 1303 aa7.27□□□□□ -1.24
LIG3-206ENST00000586058 SIPA1L1O43166 1804 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 GPR75-ASB3A0A0A6YYF3 556 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 TSPY2A6NKD2 308 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 SNPHO15079 494 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 CDKL5O76039 1030 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 CD2BP2O95400 341 aaKnown RBP7.27□□□□□ -1.25
LIG3-206ENST00000586058 MMP14P50281 582 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 EIF6P56537 245 aaKnown RBP7.27□□□□□ -1.25
LIG3-206ENST00000586058 PPP4CP60510 307 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 CTDSPL2Q05D32 466 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 TNIP1Q15025 636 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 PPP4R3BQ5MIZ7 849 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 HHIPL2Q6UWX4 724 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 ADGRA1Q86SQ6 560 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 TTC6Q86TZ1 520 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 KIAA0825Q8IV33 1275 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 TMTC2Q8N394 836 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 FAM184AQ8NB25 1140 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 L3MBTL3Q96JM7 780 aaPredicted RBP7.27□□□□□ -1.25
LIG3-206ENST00000586058 MKNK2Q9HBH9 465 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 DCP1AQ9NPI6 582 aaPredicted RBP7.27□□□□□ -1.25
LIG3-206ENST00000586058 ANAPC4Q9UJX5 808 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 ANGEL1Q9UNK9 670 aaKnown RBP7.27□□□□□ -1.25
LIG3-206ENST00000586058 ATP6V1DQ9Y5K8 247 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 ROBO3Q96MS0 1386 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 GREB1LQ9C091 1923 aaPredicted RBP7.27□□□□□ -1.25
LIG3-206ENST00000586058 GAKO14976 1311 aa7.27□□□□□ -1.25
LIG3-206ENST00000586058 DOCK1Q14185 1865 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 COL2A1P02458 1487 aaPredicted RBP7.26□□□□□ -1.25
LIG3-206ENST00000586058 GOLGA8BA8MQT2 603 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 B4E1Z4 1266 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 IFIT3O14879 490 aaKnown RBP7.26□□□□□ -1.25
LIG3-206ENST00000586058 PRKAB2O43741 272 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 RANBP6O60518 1105 aaKnown RBP7.26□□□□□ -1.25
LIG3-206ENST00000586058 KDM4AO75164 1064 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 CPA1P15085 419 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 CRKP46108 304 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 SCNN1DP51172 638 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 HMGN5P82970 282 aaKnown RBP7.26□□□□□ -1.25
LIG3-206ENST00000586058 PICALMQ13492 652 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 WTAPQ15007 396 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 SBK1Q52WX2 424 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 TMEM67Q5HYA8 995 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 CIAPIN1Q6FI81 312 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 TBC1D10CQ8IV04 446 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 CCDC83Q8IWF9 413 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 CRACR2BQ8N4Y2 399 aaPredicted RBP7.26□□□□□ -1.25
LIG3-206ENST00000586058 SH3RF3Q8TEJ3 882 aaPredicted RBP7.26□□□□□ -1.25
LIG3-206ENST00000586058 TGFBRAP1Q8WUH2 860 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 C7orf43Q8WVR3 580 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 TCEANC2Q96MN5 208 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 ZNF277Q9NRM2 450 aaPredicted RBP7.26□□□□□ -1.25
LIG3-206ENST00000586058 SERPINA10Q9UK55 444 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 ZNRF3Q9ULT6 936 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 DAGLAQ9Y4D2 1042 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 FLT1P17948 1338 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 NEDD4P46934 1319 aa7.26□□□□□ -1.25
LIG3-206ENST00000586058 WDR33Q9C0J8 1336 aaKnown RBP7.26□□□□□ -1.25
LIG3-206ENST00000586058 RBBP6Q7Z6E9 1792 aaKnown RBP7.25□□□□□ -1.25
LIG3-206ENST00000586058 SCN4AP35499 1836 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 KLF18A0A0U1RQI7 1052 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 CCDC196A0A1B0GTZ2 297 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 DDX11L8A8MPP1 907 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 USP17L12C9JPN9 530 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 USP17L21D6R901 530 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 TSPY3P0CV98 308 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 TSPY8P0CW00 308 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 CALM1P0DP23 149 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 CALM2P0DP24 149 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 CALM3P0DP25 149 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 RPS12P25398 132 aaKnown RBP7.25□□□□□ -1.25
LIG3-206ENST00000586058 TNNI2P48788 182 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 METAP2P50579 478 aaKnown RBP eCLIP7.25□□□□□ -1.25
LIG3-206ENST00000586058 STK3Q13188 491 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 CUL4AQ13619 759 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 TOB2Q14106 344 aaPredicted RBP7.25□□□□□ -1.25
LIG3-206ENST00000586058 DACT2Q5SW24 774 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 DPY19L2Q6NUT2 758 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 RSBN1LQ6PCB5 846 aaPredicted RBP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms