RNA–Protein interactions for RNA: ENST00000583649.1

CASC3-208, Transcript of CASC3, exon junction complex subunit, human

TSL 3

Gene CASC3, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC3-208	ENST00000583649	SEMA3E	O15041	775 aa		13.89	□□□□□ -0.19
CASC3-208	ENST00000583649	TBC1D12	O60347	775 aa		13.89	□□□□□ -0.19
CASC3-208	ENST00000583649	CACNB2	Q08289	660 aa	Predicted RBP	13.89	□□□□□ -0.19
CASC3-208	ENST00000583649	LRRC24	Q50LG9	513 aa		13.89	□□□□□ -0.19
CASC3-208	ENST00000583649	DZIP1	Q86YF9	867 aa	Known RBP	13.89	□□□□□ -0.19
CASC3-208	ENST00000583649	DENND2A	Q9ULE3	1009 aa		13.89	□□□□□ -0.19
CASC3-208	ENST00000583649	USP17L5	A8MUK1	530 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	DNM1L	O00429	736 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	PRDX5	P30044	214 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	HMGCS2	P54868	508 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	PICALM	Q13492	652 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	LHX8	Q68G74	356 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	ZFPM1	Q8IX07	1006 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	VGLL2	Q8N8G2	317 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	APBA2	Q99767	749 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	SALL1	Q9NSC2	1324 aa		13.88	□□□□□ -0.19
CASC3-208	ENST00000583649	CACNA1F	O60840	1977 aa		13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	ATRNL1	Q5VV63	1379 aa		13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	ATN1	P54259	1190 aa	Predicted RBP	13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	CCNA1	P78396	465 aa		13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	SHH	Q15465	462 aa		13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	WWC1	Q8IX03	1113 aa		13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	ARRDC4	Q8NCT1	418 aa		13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	LPAR1	Q92633	364 aa		13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	SUCLG2	Q96I99	432 aa		13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	BICC1	Q9H694	974 aa	Known RBP	13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.87	□□□□□ -0.19
CASC3-208	ENST00000583649	VAMP4	O75379	141 aa		13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	MAP4K4	O95819	1239 aa	Predicted RBP	13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	FGFR2	P21802	821 aa		13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	CNGA1	P29973	690 aa		13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	CCND3	P30281	292 aa	Predicted RBP	13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	RABL6	Q3YEC7	729 aa	Predicted RBP	13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	SH3D19	Q5HYK7	790 aa		13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	PLEKHH3	Q7Z736	793 aa		13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	ATXN2L	Q8WWM7	1075 aa	Known RBP	13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	ATP11B	Q9Y2G3	1177 aa		13.86	□□□□□ -0.19
CASC3-208	ENST00000583649	DOCK2	Q92608	1830 aa		13.85	□□□□□ -0.19
CASC3-208	ENST00000583649	DDTL	A6NHG4	134 aa	Predicted RBP	13.85	□□□□□ -0.19
CASC3-208	ENST00000583649	C19orf81	C9J6K1	198 aa		13.85	□□□□□ -0.19
CASC3-208	ENST00000583649	KBTBD13	C9JR72	458 aa		13.85	□□□□□ -0.19
CASC3-208	ENST00000583649	HOXA7	P31268	230 aa	Predicted RBP	13.85	□□□□□ -0.19
CASC3-208	ENST00000583649	RTP1	P59025	263 aa		13.85	□□□□□ -0.19
CASC3-208	ENST00000583649	EDC3	Q96F86	508 aa	Known RBP	13.85	□□□□□ -0.19
CASC3-208	ENST00000583649	DDX20	Q9UHI6	824 aa	Known RBP	13.85	□□□□□ -0.19
CASC3-208	ENST00000583649	DOCK1	Q14185	1865 aa		13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	NPM3	O75607	178 aa	Known RBP	13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	CAP2	P40123	477 aa		13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	HERVK_113	P62684	666 aa		13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	ATP2B2	Q01814	1243 aa		13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	GPR142	Q7Z601	462 aa		13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	GAS2L1	Q99501	681 aa	Predicted RBP	13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	HERC5	Q9UII4	1024 aa	Known RBP	13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	IVNS1ABP	Q9Y6Y0	642 aa		13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	GAK	O14976	1311 aa		13.84	□□□□□ -0.19
CASC3-208	ENST00000583649	EYA2	O00167	538 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	ASNS	P08243	561 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	BTD	P43251	543 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	BACE1	P56817	501 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	ERVK-9	P63128	1117 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	ERVK-24	P63145	666 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	MAP2K5	Q13163	448 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	NCBP3	Q53F19	620 aa	Known RBP	13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	SH3BP5L	Q7L8J4	393 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	CCDC84	Q86UT8	332 aa	Predicted RBP	13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	FAM163A	Q96GL9	167 aa	Predicted RBP	13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	RNPC3	Q96LT9	517 aa	Known RBP	13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	C1QTNF1	Q9BXJ1	281 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	TRIM34	Q9BYJ4	488 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	TTYH1	Q9H313	450 aa	Predicted RBP	13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	CEP126	Q9P2H0	1117 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	ABCF2	Q9UG63	623 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	UTY	O14607	1347 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	FANCI	Q9NVI1	1328 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	DOCK3	Q8IZD9	2030 aa		13.83	□□□□□ -0.2
CASC3-208	ENST00000583649	LDHC	P07864	332 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	GSTO1	P78417	241 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	MAP3K12	Q12852	859 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	DDX10	Q13206	875 aa	Known RBP	13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	MTMR2	Q13614	643 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	ATP2B3	Q16720	1220 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	MORN1	Q5T089	497 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	BAD	Q92934	168 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	KAZALD1	Q96I82	304 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	P2RX7	Q99572	595 aa	Known RBP	13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	WDR18	Q9BV38	432 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	GINM1	Q9NU53	330 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	FBXO3	Q9UK99	471 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	PTPRF	P10586	1907 aa		13.82	□□□□□ -0.2
CASC3-208	ENST00000583649	USP17L10	C9JJH3	530 aa		13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	CCL14	Q16627	93 aa		13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	C9orf50	Q5SZB4	431 aa		13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	WDR78	Q5VTH9	848 aa		13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	SLC39A5	Q6ZMH5	540 aa		13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	USP6NL	Q92738	828 aa		13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	NOL10	Q9BSC4	688 aa	Known RBP	13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	PAGR1	Q9BTK6	254 aa		13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms