RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 CDX2Q99626 313 aaPredicted RBP11.64□□□□□ -0.55
SMARCD2-208ENST00000580054 IDI2Q9BXS1 227 aa11.64□□□□□ -0.55
SMARCD2-208ENST00000580054 PNMA3Q9UL41 463 aa11.64□□□□□ -0.55
SMARCD2-208ENST00000580054 UTYO14607 1347 aa11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 SIPA1L1O43166 1804 aa11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 CTNND1O60716 968 aaKnown RBP11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 ENTPD3O75355 529 aa11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 LDHBP07195 334 aaKnown RBP11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 CCND3P30281 292 aaPredicted RBP11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 MAP3K10Q02779 954 aa11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 PICALMQ13492 652 aa11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 NCBP3Q53F19 620 aaKnown RBP11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 ASCC2Q9H1I8 757 aaPredicted RBP11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 RAPGEFL1Q9UHV5 662 aa11.63□□□□□ -0.55
SMARCD2-208ENST00000580054 RLFQ13129 1914 aa11.62□□□□□ -0.55
SMARCD2-208ENST00000580054 SLC5A1P13866 664 aa11.62□□□□□ -0.55
SMARCD2-208ENST00000580054 GCLCP48506 637 aaPredicted RBP11.62□□□□□ -0.55
SMARCD2-208ENST00000580054 HMGCS2P54868 508 aa11.62□□□□□ -0.55
SMARCD2-208ENST00000580054 SPP2Q13103 211 aa11.62□□□□□ -0.55
SMARCD2-208ENST00000580054 WDR63Q8IWG1 891 aa11.62□□□□□ -0.55
SMARCD2-208ENST00000580054 PROCA1Q8NCQ7 364 aaPredicted RBP11.62□□□□□ -0.55
SMARCD2-208ENST00000580054 MYLIPQ8WY64 445 aa11.62□□□□□ -0.55
SMARCD2-208ENST00000580054 GAKO14976 1311 aa11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 COL9A1P20849 921 aa11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 CACNB2Q08289 660 aaPredicted RBP11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 RRP1BQ14684 758 aaKnown RBP11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 CCL14Q16627 93 aa11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 LHX8Q68G74 356 aa11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 LPIN2Q92539 896 aa11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 MRS2Q9HD23 443 aa11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 TXNRD2Q9NNW7 524 aa11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 MORF4L1Q9UBU8 362 aa11.61□□□□□ -0.55
SMARCD2-208ENST00000580054 SALL1Q9NSC2 1324 aa11.6□□□□□ -0.55
SMARCD2-208ENST00000580054 ZKSCAN1P17029 563 aaPredicted RBP11.6□□□□□ -0.55
SMARCD2-208ENST00000580054 PHKA1P46020 1223 aa11.6□□□□□ -0.55
SMARCD2-208ENST00000580054 RFX5P48382 616 aaPredicted RBP11.6□□□□□ -0.55
SMARCD2-208ENST00000580054 C9orf50Q5SZB4 431 aa11.6□□□□□ -0.55
SMARCD2-208ENST00000580054 ZNF280CQ8ND82 737 aa11.6□□□□□ -0.55
SMARCD2-208ENST00000580054 TTYH1Q9H313 450 aaPredicted RBP11.6□□□□□ -0.55
SMARCD2-208ENST00000580054 CCER2I3L3R5 266 aa11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 EYA2O00167 538 aa11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 BTDP43251 543 aa11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 ATN1P54259 1190 aaPredicted RBP11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 SOCS4Q8WXH5 440 aa11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 LBHD1Q9BQE6 289 aaPredicted RBP11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 NUDT12Q9BQG2 462 aa11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 SENP6Q9GZR1 1112 aaPredicted RBP11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 SEMA6BQ9H3T3 888 aa11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 CDK5RAP2Q96SN8 1893 aa11.59□□□□□ -0.55
SMARCD2-208ENST00000580054 NCOR1O75376 2440 aa11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 XRCC5P13010 732 aaKnown RBP11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 PABPC4Q13310 644 aaKnown RBP eCLIP11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 SHHQ15465 462 aa11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 ATG9AQ7Z3C6 839 aa11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 DZIP1Q86YF9 867 aaKnown RBP11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 MIER1Q8N108 512 aa11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 USP6NLQ92738 828 aa11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 PORCNQ9H237 461 aa11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 MYO9BQ13459 2157 aa11.58□□□□□ -0.56
SMARCD2-208ENST00000580054 TBC1D12O60347 775 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 FOSL2P15408 326 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 ADORA1P30542 326 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 RHBDL3P58872 404 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 IRX3P78415 501 aaPredicted RBP11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 MTMR2Q13614 643 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 ATP2B3Q16720 1220 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 SH3D19Q5HYK7 790 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 POTEEQ6S8J3 1075 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 USP38Q8NB14 1042 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 P2RX7Q99572 595 aaKnown RBP11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 OSBPL5Q9H0X9 879 aaPredicted RBP11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 SIL1Q9H173 461 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 DENND2AQ9ULE3 1009 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 MROH7-TTC4A0A0A0MT08 1334 aa11.57□□□□□ -0.56
SMARCD2-208ENST00000580054 CAP2P40123 477 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 RTP1P59025 263 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 HERVK_113P62684 666 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 RASGRF1Q13972 1273 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 PDE3AQ14432 1141 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 SHROOM1Q2M3G4 852 aaPredicted RBP11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 Q3C1V9 767 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 MORN1Q5T089 497 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 GPR142Q7Z601 462 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 GPRC5AQ8NFJ5 357 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 ZNF384Q8TF68 577 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 APBA2Q99767 749 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 GNL3LQ9NVN8 582 aaKnown RBP11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 FLRT1Q9NZU1 646 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 ABCF2Q9UG63 623 aa11.56□□□□□ -0.56
SMARCD2-208ENST00000580054 USP17L5A8MUK1 530 aa11.55□□□□□ -0.56
SMARCD2-208ENST00000580054 SEMA3EO15041 775 aa11.55□□□□□ -0.56
SMARCD2-208ENST00000580054 RGS2P41220 211 aa11.55□□□□□ -0.56
SMARCD2-208ENST00000580054 ERVK-9P63128 1117 aa11.55□□□□□ -0.56
SMARCD2-208ENST00000580054 ERVK-24P63145 666 aa11.55□□□□□ -0.56
SMARCD2-208ENST00000580054 JAG1P78504 1218 aa11.55□□□□□ -0.56
SMARCD2-208ENST00000580054 TRMT44Q8IYL2 757 aaKnown RBP11.55□□□□□ -0.56
SMARCD2-208ENST00000580054 PAGR1Q9BTK6 254 aa11.55□□□□□ -0.56
SMARCD2-208ENST00000580054 USP44Q9H0E7 712 aa11.55□□□□□ -0.56
SMARCD2-208ENST00000580054 RBPJLQ9UBG7 517 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms