RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 USP5P45974 858 aa28.97■■■□□ 2.23
SHMT1-206ENST00000579558 ECHDC1Q9NTX5 307 aa28.97■■■□□ 2.23
SHMT1-206ENST00000579558 SAP30BPQ9UHR5 308 aaKnown RBP28.97■■■□□ 2.23
SHMT1-206ENST00000579558 SIPA1L1O43166 1804 aa28.97■■■□□ 2.23
SHMT1-206ENST00000579558 ZNF532Q9HCE3 1301 aa28.96■■■□□ 2.23
SHMT1-206ENST00000579558 MAGEB6P1A0A0J9YX57 407 aa28.96■■■□□ 2.23
SHMT1-206ENST00000579558 GPATCH3Q96I76 525 aa28.96■■■□□ 2.23
SHMT1-206ENST00000579558 RIOK1Q9BRS2 568 aaKnown RBP28.96■■■□□ 2.23
SHMT1-206ENST00000579558 ZFYVE28Q9HCC9 887 aa28.96■■■□□ 2.23
SHMT1-206ENST00000579558 PALD1Q9ULE6 856 aa28.96■■■□□ 2.23
SHMT1-206ENST00000579558 ZHX2Q9Y6X8 837 aa28.96■■■□□ 2.23
SHMT1-206ENST00000579558 ZCCHC17Q9NP64 241 aaKnown RBP28.95■■■□□ 2.22
SHMT1-206ENST00000579558 TCRBV5S4A2TA0A5A2 114 aa28.94■■■□□ 2.22
SHMT1-206ENST00000579558 CXCL11O14625 94 aa28.94■■■□□ 2.22
SHMT1-206ENST00000579558 HLA-DOAP06340 250 aa28.94■■■□□ 2.22
SHMT1-206ENST00000579558 TRIM34Q9BYJ4 488 aa28.94■■■□□ 2.22
SHMT1-206ENST00000579558 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.94■■■□□ 2.22
SHMT1-206ENST00000579558 MYH1P12882 1939 aa28.94■■■□□ 2.22
SHMT1-206ENST00000579558 CRACR2BQ8N4Y2 399 aaPredicted RBP28.93■■■□□ 2.22
SHMT1-206ENST00000579558 FRMD4AQ9P2Q2 1039 aaPredicted RBP28.93■■■□□ 2.22
SHMT1-206ENST00000579558 ATAD5Q96QE3 1844 aa28.92■■■□□ 2.22
SHMT1-206ENST00000579558 SLC4A8Q2Y0W8 1093 aa28.92■■■□□ 2.22
SHMT1-206ENST00000579558 FOXP4Q8IVH2 680 aaPredicted RBP28.92■■■□□ 2.22
SHMT1-206ENST00000579558 AFG3L2Q9Y4W6 797 aa28.92■■■□□ 2.22
SHMT1-206ENST00000579558 PHIPQ8WWQ0 1821 aa28.92■■■□□ 2.22
SHMT1-206ENST00000579558 MYH7P12883 1935 aa28.91■■■□□ 2.22
SHMT1-206ENST00000579558 ADD2P35612 726 aa28.91■■■□□ 2.22
SHMT1-206ENST00000579558 CAP2P40123 477 aa28.91■■■□□ 2.22
SHMT1-206ENST00000579558 ANKRD23Q86SG2 305 aa28.91■■■□□ 2.22
SHMT1-206ENST00000579558 CCDC84Q86UT8 332 aaPredicted RBP28.91■■■□□ 2.22
SHMT1-206ENST00000579558 CRNKL1Q9BZJ0 848 aaKnown RBP28.91■■■□□ 2.22
SHMT1-206ENST00000579558 AAMPQ13685 434 aa28.9■■■□□ 2.22
SHMT1-206ENST00000579558 MOGSQ13724 837 aa28.9■■■□□ 2.22
SHMT1-206ENST00000579558 RRP1BQ14684 758 aaKnown RBP28.9■■■□□ 2.22
SHMT1-206ENST00000579558 TSHZ3Q63HK5 1081 aa28.9■■■□□ 2.22
SHMT1-206ENST00000579558 METTL16Q86W50 562 aaKnown RBP28.9■■■□□ 2.22
SHMT1-206ENST00000579558 DNAJC18Q9H819 358 aa28.9■■■□□ 2.22
SHMT1-206ENST00000579558 A0A0G2JLL6 359 aaPredicted RBP28.89■■■□□ 2.22
SHMT1-206ENST00000579558 CCDC85CA6NKD9 419 aa28.89■■■□□ 2.22
SHMT1-206ENST00000579558 SP3Q02447 781 aa28.89■■■□□ 2.22
SHMT1-206ENST00000579558 PKN2Q16513 984 aaKnown RBP28.89■■■□□ 2.22
SHMT1-206ENST00000579558 SLFNL1Q499Z3 407 aa28.89■■■□□ 2.22
SHMT1-206ENST00000579558 PRRT2Q7Z6L0 340 aaPredicted RBP28.89■■■□□ 2.22
SHMT1-206ENST00000579558 ERO1AQ96HE7 468 aa28.89■■■□□ 2.22
SHMT1-206ENST00000579558 NAV1Q8NEY1 1877 aa28.89■■■□□ 2.21
SHMT1-206ENST00000579558 TRIM75PA6NK02 468 aa28.88■■■□□ 2.21
SHMT1-206ENST00000579558 PDHXO00330 501 aa28.88■■■□□ 2.21
SHMT1-206ENST00000579558 HDAC1Q13547 482 aaPredicted RBP28.88■■■□□ 2.21
SHMT1-206ENST00000579558 LCORLQ8N3X6 602 aa28.88■■■□□ 2.21
SHMT1-206ENST00000579558 ZBTB47Q9UFB7 747 aaPredicted RBP28.88■■■□□ 2.21
SHMT1-206ENST00000579558 PTPRFP10586 1907 aa28.87■■■□□ 2.21
SHMT1-206ENST00000579558 ZSCAN25Q6NSZ9 544 aa28.87■■■□□ 2.21
SHMT1-206ENST00000579558 GADL1Q6ZQY3 521 aa28.87■■■□□ 2.21
SHMT1-206ENST00000579558 FASTKD5Q7L8L6 764 aaKnown RBP28.87■■■□□ 2.21
SHMT1-206ENST00000579558 CD99L2Q8TCZ2 262 aa28.87■■■□□ 2.21
SHMT1-206ENST00000579558 DDX60LQ5H9U9 1706 aaKnown RBP28.86■■■□□ 2.21
SHMT1-206ENST00000579558 TLR2O60603 784 aa28.86■■■□□ 2.21
SHMT1-206ENST00000579558 UBE3CQ15386 1083 aa28.86■■■□□ 2.21
SHMT1-206ENST00000579558 TTC6Q86TZ1 520 aa28.86■■■□□ 2.21
SHMT1-206ENST00000579558 ARMT1Q9H993 441 aa28.86■■■□□ 2.21
SHMT1-206ENST00000579558 TTC41PQ6P2S7 1318 aa28.86■■■□□ 2.21
SHMT1-206ENST00000579558 USP17L5A8MUK1 530 aa28.85■■■□□ 2.21
SHMT1-206ENST00000579558 MBD4O95243 580 aa28.85■■■□□ 2.21
SHMT1-206ENST00000579558 CHGBP05060 677 aa28.85■■■□□ 2.21
SHMT1-206ENST00000579558 GPAT2Q6NUI2 795 aa28.85■■■□□ 2.21
SHMT1-206ENST00000579558 GCC1Q96CN9 775 aa28.85■■■□□ 2.21
SHMT1-206ENST00000579558 TBC1D2Q9BYX2 928 aa28.85■■■□□ 2.21
SHMT1-206ENST00000579558 SERPINB13Q9UIV8 391 aa28.85■■■□□ 2.21
SHMT1-206ENST00000579558 TRIM17Q9Y577 477 aa28.85■■■□□ 2.21
SHMT1-206ENST00000579558 SUPT16HQ9Y5B9 1047 aaKnown RBP28.85■■■□□ 2.21
SHMT1-206ENST00000579558 POLR3DP05423 398 aaPredicted RBP28.84■■■□□ 2.21
SHMT1-206ENST00000579558 ASNSP08243 561 aa28.84■■■□□ 2.21
SHMT1-206ENST00000579558 ANKRD45Q5TZF3 282 aa28.84■■■□□ 2.21
SHMT1-206ENST00000579558 ZNF280CQ8ND82 737 aa28.84■■■□□ 2.21
SHMT1-206ENST00000579558 EXOC6Q8TAG9 804 aa28.84■■■□□ 2.21
SHMT1-206ENST00000579558 OTUD7AQ8TE49 926 aaPredicted RBP28.84■■■□□ 2.21
SHMT1-206ENST00000579558 SDR42E1Q8WUS8 393 aa28.84■■■□□ 2.21
SHMT1-206ENST00000579558 EHD4Q9H223 541 aa28.84■■■□□ 2.21
SHMT1-206ENST00000579558 ERC2O15083 957 aa28.83■■■□□ 2.21
SHMT1-206ENST00000579558 GDF11O95390 407 aa28.83■■■□□ 2.21
SHMT1-206ENST00000579558 SPP2Q13103 211 aa28.83■■■□□ 2.21
SHMT1-206ENST00000579558 FBXO46Q6PJ61 603 aaPredicted RBP28.83■■■□□ 2.21
SHMT1-206ENST00000579558 OTOP1Q7RTM1 612 aa28.83■■■□□ 2.21
SHMT1-206ENST00000579558 KBTBD3Q8NAB2 608 aa28.83■■■□□ 2.21
SHMT1-206ENST00000579558 AS3MTQ9HBK9 375 aa28.83■■■□□ 2.21
SHMT1-206ENST00000579558 MCM9Q9NXL9 1143 aa28.83■■■□□ 2.21
SHMT1-206ENST00000579558 PARK7Q99497 189 aaKnown RBP28.82■■■□□ 2.2
SHMT1-206ENST00000579558 DCP1AQ9NPI6 582 aaPredicted RBP28.82■■■□□ 2.2
SHMT1-206ENST00000579558 GINM1Q9NU53 330 aa28.82■■■□□ 2.2
SHMT1-206ENST00000579558 MX1P20591 662 aa28.81■■■□□ 2.2
SHMT1-206ENST00000579558 PLCD1P51178 756 aa28.81■■■□□ 2.2
SHMT1-206ENST00000579558 JAG1P78504 1218 aa28.81■■■□□ 2.2
SHMT1-206ENST00000579558 SHROOM1Q2M3G4 852 aaPredicted RBP28.81■■■□□ 2.2
SHMT1-206ENST00000579558 EFCC1Q9HA90 598 aa28.81■■■□□ 2.2
SHMT1-206ENST00000579558 HPS5Q9UPZ3 1129 aa28.81■■■□□ 2.2
SHMT1-206ENST00000579558 GLRX3O76003 335 aaKnown RBP28.8■■■□□ 2.2
SHMT1-206ENST00000579558 PI4K2BQ8TCG2 481 aa28.8■■■□□ 2.2
SHMT1-206ENST00000579558 CPA4Q9UI42 421 aa28.8■■■□□ 2.2
SHMT1-206ENST00000579558 ZBTB21Q9ULJ3 1066 aa28.8■■■□□ 2.2
SHMT1-206ENST00000579558 ADGRA2Q96PE1 1338 aa28.79■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms