RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 RPS6KB1P23443 525 aa19.11■□□□□ 0.65
SS18-211ENST00000578954 TNFAIP1Q13829 316 aa19.11■□□□□ 0.65
SS18-211ENST00000578954 COL9A3Q14050 684 aaPredicted RBP19.11■□□□□ 0.65
SS18-211ENST00000578954 METTL16Q86W50 562 aaKnown RBP19.11■□□□□ 0.65
SS18-211ENST00000578954 SNX21Q969T3 373 aa19.11■□□□□ 0.65
SS18-211ENST00000578954 TTC14Q96N46 770 aa19.11■□□□□ 0.65
SS18-211ENST00000578954 UPF3BQ9BZI7 483 aaKnown RBP19.11■□□□□ 0.65
SS18-211ENST00000578954 KRT23Q9C075 422 aa19.11■□□□□ 0.65
SS18-211ENST00000578954 ALDH8A1Q9H2A2 487 aaPredicted RBP19.11■□□□□ 0.65
SS18-211ENST00000578954 VEZTQ9HBM0 779 aa19.11■□□□□ 0.65
SS18-211ENST00000578954 CYP46A1Q9Y6A2 500 aa19.11■□□□□ 0.65
SS18-211ENST00000578954 ASTN2O75129 1339 aaPredicted RBP19.1■□□□□ 0.65
SS18-211ENST00000578954 IQCA1LA6NCM1 817 aa19.1■□□□□ 0.65
SS18-211ENST00000578954 DDTLA6NHG4 134 aaPredicted RBP19.1■□□□□ 0.65
SS18-211ENST00000578954 POTECB2RU33 542 aa19.1■□□□□ 0.65
SS18-211ENST00000578954 TCP10L2B9ZVM9 353 aa19.1■□□□□ 0.65
SS18-211ENST00000578954 HLA-DOAP06340 250 aa19.1■□□□□ 0.65
SS18-211ENST00000578954 TNNI2P48788 182 aa19.1■□□□□ 0.65
SS18-211ENST00000578954 EXOSC10Q01780 885 aaKnown RBP19.1■□□□□ 0.65
SS18-211ENST00000578954 PDE4BQ07343 736 aa19.1■□□□□ 0.65
SS18-211ENST00000578954 TCP10Q12799 353 aa19.1■□□□□ 0.65
SS18-211ENST00000578954 TRDNQ13061 729 aa19.1■□□□□ 0.65
SS18-211ENST00000578954 USP50Q70EL3 339 aaPredicted RBP19.1■□□□□ 0.65
SS18-211ENST00000578954 DHX32Q7L7V1 743 aaKnown RBP19.1■□□□□ 0.65
SS18-211ENST00000578954 APOBEC3FQ8IUX4 373 aaKnown RBP19.1■□□□□ 0.65
SS18-211ENST00000578954 PI4KBQ9UBF8 816 aa19.1■□□□□ 0.65
SS18-211ENST00000578954 NEK4P51957 841 aa19.09■□□□□ 0.65
SS18-211ENST00000578954 RALYLQ86SE5 291 aaKnown RBP19.09■□□□□ 0.65
SS18-211ENST00000578954 FBXL16Q8N461 479 aa19.09■□□□□ 0.65
SS18-211ENST00000578954 DYNLL2Q96FJ2 89 aa19.09■□□□□ 0.65
SS18-211ENST00000578954 MTA3Q9BTC8 594 aa19.09■□□□□ 0.65
SS18-211ENST00000578954 SWAP70Q9UH65 585 aa19.09■□□□□ 0.65
SS18-211ENST00000578954 SERPINB13Q9UIV8 391 aa19.09■□□□□ 0.65
SS18-211ENST00000578954 B4E1Z4 1266 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 ST18O60284 1047 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 CPA1P15085 419 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 EPHX2P34913 555 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 ANP32AP39687 249 aaKnown RBP19.08■□□□□ 0.64
SS18-211ENST00000578954 ANTXR2P58335 489 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 FOXP4Q8IVH2 680 aaPredicted RBP19.08■□□□□ 0.64
SS18-211ENST00000578954 NKX2-3Q8TAU0 364 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 AGXT2Q9BYV1 514 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 TAF1DQ9H5J8 278 aaPredicted RBP19.08■□□□□ 0.64
SS18-211ENST00000578954 ZNF287Q9HBT7 754 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 INCENPQ9NQS7 918 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 GGA3Q9NZ52 723 aa19.08■□□□□ 0.64
SS18-211ENST00000578954 MCM5P33992 734 aa19.07■□□□□ 0.64
SS18-211ENST00000578954 CDK8P49336 464 aa19.07■□□□□ 0.64
SS18-211ENST00000578954 RASA3Q14644 834 aa19.07■□□□□ 0.64
SS18-211ENST00000578954 SLC4A8Q2Y0W8 1093 aa19.07■□□□□ 0.64
SS18-211ENST00000578954 ANGEL2Q5VTE6 544 aaKnown RBP19.07■□□□□ 0.64
SS18-211ENST00000578954 ZC3H15Q8WU90 426 aaKnown RBP19.07■□□□□ 0.64
SS18-211ENST00000578954 ESR2Q92731 530 aa19.07■□□□□ 0.64
SS18-211ENST00000578954 TEPSINQ96N21 525 aa19.07■□□□□ 0.64
SS18-211ENST00000578954 DNAJC18Q9H819 358 aa19.07■□□□□ 0.64
SS18-211ENST00000578954 PDRG1Q9NUG6 133 aa19.07■□□□□ 0.64
SS18-211ENST00000578954 PPP2R3BQ9Y5P8 575 aa19.07■□□□□ 0.64
SS18-211ENST00000578954 TBC1D12O60347 775 aa19.06■□□□□ 0.64
SS18-211ENST00000578954 RASA1P20936 1047 aa19.06■□□□□ 0.64
SS18-211ENST00000578954 MAP3K10Q02779 954 aa19.06■□□□□ 0.64
SS18-211ENST00000578954 CYB5R4Q7L1T6 521 aa19.06■□□□□ 0.64
SS18-211ENST00000578954 ZSCAN29Q8IWY8 852 aaPredicted RBP19.06■□□□□ 0.64
SS18-211ENST00000578954 SLC44A5Q8NCS7 719 aa19.06■□□□□ 0.64
SS18-211ENST00000578954 CSRNP1Q96S65 589 aa19.06■□□□□ 0.64
SS18-211ENST00000578954 TMEM39BQ9GZU3 492 aa19.06■□□□□ 0.64
SS18-211ENST00000578954 HERC5Q9UII4 1024 aaKnown RBP19.06■□□□□ 0.64
SS18-211ENST00000578954 PLIN4Q96Q06 1357 aa19.06■□□□□ 0.64
SS18-211ENST00000578954 PRC1O43663 620 aa19.05■□□□□ 0.64
SS18-211ENST00000578954 KDM4AO75164 1064 aa19.05■□□□□ 0.64
SS18-211ENST00000578954 CD2BP2O95400 341 aaKnown RBP19.05■□□□□ 0.64
SS18-211ENST00000578954 SHMT1P34896 483 aa19.05■□□□□ 0.64
SS18-211ENST00000578954 MCM2P49736 904 aa19.05■□□□□ 0.64
SS18-211ENST00000578954 DEFB129Q9H1M3 183 aa19.05■□□□□ 0.64
SS18-211ENST00000578954 ZSWIM5Q9P217 1185 aa19.05■□□□□ 0.64
SS18-211ENST00000578954 PRDM1O75626 825 aa19.04■□□□□ 0.64
SS18-211ENST00000578954 AK2P54819 239 aa19.04■□□□□ 0.64
SS18-211ENST00000578954 RRP12Q5JTH9 1297 aaKnown RBP19.04■□□□□ 0.64
SS18-211ENST00000578954 TATDN1Q6P1N9 297 aa19.04■□□□□ 0.64
SS18-211ENST00000578954 PNMA8AQ86V59 439 aaPredicted RBP19.04■□□□□ 0.64
SS18-211ENST00000578954 STK11IPQ8N1F8 1099 aa19.04■□□□□ 0.64
SS18-211ENST00000578954 TMEM87BQ96K49 555 aa19.04■□□□□ 0.64
SS18-211ENST00000578954 MKNK2Q9HBH9 465 aa19.04■□□□□ 0.64
SS18-211ENST00000578954 TOMM22Q9NS69 142 aa19.04■□□□□ 0.64
SS18-211ENST00000578954 TOB2Q14106 344 aaPredicted RBP19.03■□□□□ 0.64
SS18-211ENST00000578954 ANKRD1Q15327 319 aa19.03■□□□□ 0.64
SS18-211ENST00000578954 CDAN1Q8IWY9 1227 aa19.03■□□□□ 0.64
SS18-211ENST00000578954 TCEANC2Q96MN5 208 aa19.03■□□□□ 0.64
SS18-211ENST00000578954 TBC1D2Q9BYX2 928 aa19.03■□□□□ 0.64
SS18-211ENST00000578954 TCP11L1Q9NUJ3 509 aa19.03■□□□□ 0.64
SS18-211ENST00000578954 GREB1LQ9C091 1923 aaPredicted RBP19.03■□□□□ 0.64
SS18-211ENST00000578954 MYH8P13535 1937 aa19.02■□□□□ 0.64
SS18-211ENST00000578954 SH2B2O14492 632 aaPredicted RBP19.02■□□□□ 0.64
SS18-211ENST00000578954 RANBP6O60518 1105 aaKnown RBP19.02■□□□□ 0.64
SS18-211ENST00000578954 EVCP57679 992 aa19.02■□□□□ 0.64
SS18-211ENST00000578954 Q6ZUG5 572 aa19.02■□□□□ 0.64
SS18-211ENST00000578954 ZNF444Q8N0Y2 327 aaPredicted RBP19.02■□□□□ 0.64
SS18-211ENST00000578954 CRACR2BQ8N4Y2 399 aaPredicted RBP19.02■□□□□ 0.64
SS18-211ENST00000578954 NEDD1Q8NHV4 660 aa19.02■□□□□ 0.64
SS18-211ENST00000578954 IGDCC4Q8TDY8 1250 aa19.02■□□□□ 0.64
SS18-211ENST00000578954 CCDC17Q96LX7 622 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms