RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 FOXP4Q8IVH2 680 aaPredicted RBP23.33■■□□□ 1.33
SS18-208ENST00000577751 OTUD5Q96G74 571 aa23.33■■□□□ 1.33
SS18-208ENST00000577751 MS4A4AQ96JQ5 239 aa23.33■■□□□ 1.33
SS18-208ENST00000577751 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.33■■□□□ 1.33
SS18-208ENST00000577751 CTNND1O60716 968 aaKnown RBP23.32■■□□□ 1.32
SS18-208ENST00000577751 ZFYP08048 801 aaPredicted RBP23.32■■□□□ 1.32
SS18-208ENST00000577751 SCYL3Q8IZE3 742 aa23.32■■□□□ 1.32
SS18-208ENST00000577751 PUS7LQ9H0K6 701 aaKnown RBP23.32■■□□□ 1.32
SS18-208ENST00000577751 ARMT1Q9H993 441 aa23.32■■□□□ 1.32
SS18-208ENST00000577751 SAP30BPQ9UHR5 308 aaKnown RBP23.32■■□□□ 1.32
SS18-208ENST00000577751 DOCK1Q14185 1865 aa23.32■■□□□ 1.32
SS18-208ENST00000577751 NAV1Q8NEY1 1877 aa23.32■■□□□ 1.32
SS18-208ENST00000577751 FAM196BA6NMK8 535 aa23.31■■□□□ 1.32
SS18-208ENST00000577751 RNF113AO15541 343 aaKnown RBP23.31■■□□□ 1.32
SS18-208ENST00000577751 MBD4O95243 580 aa23.31■■□□□ 1.32
SS18-208ENST00000577751 LBX1P52954 281 aa23.31■■□□□ 1.32
SS18-208ENST00000577751 PPIL2Q13356 520 aa23.31■■□□□ 1.32
SS18-208ENST00000577751 OSBPL3Q9H4L5 887 aa23.31■■□□□ 1.32
SS18-208ENST00000577751 PRDM10Q9NQV6 1147 aa23.31■■□□□ 1.32
SS18-208ENST00000577751 IRF6O14896 467 aa23.3■■□□□ 1.32
SS18-208ENST00000577751 TRPA1O75762 1119 aa23.3■■□□□ 1.32
SS18-208ENST00000577751 LRRFIP1Q32MZ4 808 aaKnown RBP23.3■■□□□ 1.32
SS18-208ENST00000577751 PLEKHM2Q8IWE5 1019 aa23.3■■□□□ 1.32
SS18-208ENST00000577751 SDR42E1Q8WUS8 393 aa23.3■■□□□ 1.32
SS18-208ENST00000577751 APPBP2Q92624 585 aa23.3■■□□□ 1.32
SS18-208ENST00000577751 DNAJC18Q9H819 358 aa23.3■■□□□ 1.32
SS18-208ENST00000577751 TSKSQ9UJT2 592 aa23.3■■□□□ 1.32
SS18-208ENST00000577751 HLA-DOAP06340 250 aa23.29■■□□□ 1.32
SS18-208ENST00000577751 GTF2A2P52657 109 aa23.29■■□□□ 1.32
SS18-208ENST00000577751 RRP1BQ14684 758 aaKnown RBP23.29■■□□□ 1.32
SS18-208ENST00000577751 IFNL1Q8IU54 200 aa23.29■■□□□ 1.32
SS18-208ENST00000577751 OSBP2Q969R2 916 aa23.29■■□□□ 1.32
SS18-208ENST00000577751 PTPN18Q99952 460 aa23.29■■□□□ 1.32
SS18-208ENST00000577751 EHD4Q9H223 541 aa23.29■■□□□ 1.32
SS18-208ENST00000577751 DCP1AQ9NPI6 582 aaPredicted RBP23.29■■□□□ 1.32
SS18-208ENST00000577751 ATP8A2Q9NTI2 1148 aa23.29■■□□□ 1.32
SS18-208ENST00000577751 PHIPQ8WWQ0 1821 aa23.29■■□□□ 1.32
SS18-208ENST00000577751 ATAD5Q96QE3 1844 aa23.29■■□□□ 1.32
SS18-208ENST00000577751 IGF2BP3O00425 579 aaKnown RBP eCLIP23.28■■□□□ 1.32
SS18-208ENST00000577751 PRKAB2O43741 272 aa23.28■■□□□ 1.32
SS18-208ENST00000577751 PTPRAP18433 802 aa23.28■■□□□ 1.32
SS18-208ENST00000577751 CAP2P40123 477 aa23.28■■□□□ 1.32
SS18-208ENST00000577751 TTC6Q86TZ1 520 aa23.28■■□□□ 1.32
SS18-208ENST00000577751 EVI5LQ96CN4 794 aa23.28■■□□□ 1.32
SS18-208ENST00000577751 CFHR5Q9BXR6 569 aa23.28■■□□□ 1.32
SS18-208ENST00000577751 ALDH1A1P00352 501 aa23.27■■□□□ 1.32
SS18-208ENST00000577751 PLCD1P51178 756 aa23.27■■□□□ 1.32
SS18-208ENST00000577751 BRI3BPQ8WY22 251 aa23.27■■□□□ 1.32
SS18-208ENST00000577751 STRBPQ96SI9 672 aaKnown RBP23.27■■□□□ 1.32
SS18-208ENST00000577751 FSD1Q9BTV5 496 aa23.27■■□□□ 1.32
SS18-208ENST00000577751 PICK1Q9NRD5 415 aa23.27■■□□□ 1.32
SS18-208ENST00000577751 KCNH4Q9UQ05 1017 aa23.27■■□□□ 1.32
SS18-208ENST00000577751 BAZ2AQ9UIF9 1905 aaKnown RBP23.26■■□□□ 1.31
SS18-208ENST00000577751 SLC4A8Q2Y0W8 1093 aa23.26■■□□□ 1.31
SS18-208ENST00000577751 CRACR2BQ8N4Y2 399 aaPredicted RBP23.26■■□□□ 1.31
SS18-208ENST00000577751 MCM9Q9NXL9 1143 aa23.26■■□□□ 1.31
SS18-208ENST00000577751 SERPINB13Q9UIV8 391 aa23.26■■□□□ 1.31
SS18-208ENST00000577751 CCL15-CCL14A0A0B4J2E2 113 aa23.25■■□□□ 1.31
SS18-208ENST00000577751 CETPP11597 493 aa23.25■■□□□ 1.31
SS18-208ENST00000577751 SNAPC2Q13487 334 aa23.25■■□□□ 1.31
SS18-208ENST00000577751 CCL15Q16663 113 aa23.25■■□□□ 1.31
SS18-208ENST00000577751 COL13A1Q5TAT6 717 aaPredicted RBP23.25■■□□□ 1.31
SS18-208ENST00000577751 TATDN1Q6P1N9 297 aa23.25■■□□□ 1.31
SS18-208ENST00000577751 TICAM2Q86XR7 235 aa23.25■■□□□ 1.31
SS18-208ENST00000577751 SLC4A4Q9Y6R1 1079 aa23.25■■□□□ 1.31
SS18-208ENST00000577751 ZHX2Q9Y6X8 837 aa23.25■■□□□ 1.31
SS18-208ENST00000577751 CXCL11O14625 94 aa23.24■■□□□ 1.31
SS18-208ENST00000577751 POLR3DP05423 398 aaPredicted RBP23.24■■□□□ 1.31
SS18-208ENST00000577751 GABPAQ06546 454 aa23.24■■□□□ 1.31
SS18-208ENST00000577751 ZMYM1Q5SVZ6 1142 aa23.24■■□□□ 1.31
SS18-208ENST00000577751 OTUD7BQ6GQQ9 843 aa23.24■■□□□ 1.31
SS18-208ENST00000577751 AFG3L2Q9Y4W6 797 aa23.24■■□□□ 1.31
SS18-208ENST00000577751 M0R2C6 588 aa23.23■■□□□ 1.31
SS18-208ENST00000577751 GPAA1O43292 621 aa23.23■■□□□ 1.31
SS18-208ENST00000577751 TBC1D8O95759 1140 aa23.23■■□□□ 1.31
SS18-208ENST00000577751 PDE4AP27815 886 aa23.23■■□□□ 1.31
SS18-208ENST00000577751 TRIM34Q9BYJ4 488 aa23.23■■□□□ 1.31
SS18-208ENST00000577751 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.23■■□□□ 1.31
SS18-208ENST00000577751 PTPRFP10586 1907 aa23.23■■□□□ 1.31
SS18-208ENST00000577751 CASP8AP2Q9UKL3 1982 aa23.22■■□□□ 1.31
SS18-208ENST00000577751 GSG1L2A8MUP6 293 aa23.22■■□□□ 1.31
SS18-208ENST00000577751 JAG1P78504 1218 aa23.22■■□□□ 1.31
SS18-208ENST00000577751 EVX2Q03828 476 aa23.22■■□□□ 1.31
SS18-208ENST00000577751 MOGSQ13724 837 aa23.22■■□□□ 1.31
SS18-208ENST00000577751 NOM1Q5C9Z4 860 aaKnown RBP23.22■■□□□ 1.31
SS18-208ENST00000577751 SEC62Q99442 399 aaKnown RBP23.22■■□□□ 1.31
SS18-208ENST00000577751 GINM1Q9NU53 330 aa23.22■■□□□ 1.31
SS18-208ENST00000577751 TAOK2Q9UL54 1235 aa23.22■■□□□ 1.31
SS18-208ENST00000577751 C12orf60Q5U649 245 aa23.21■■□□□ 1.31
SS18-208ENST00000577751 GIMAP6Q6P9H5 292 aa23.21■■□□□ 1.31
SS18-208ENST00000577751 FAM43AQ8N2R8 423 aa23.21■■□□□ 1.31
SS18-208ENST00000577751 TBC1D2Q9BYX2 928 aa23.21■■□□□ 1.31
SS18-208ENST00000577751 USP17L12C9JPN9 530 aa23.2■■□□□ 1.3
SS18-208ENST00000577751 USP17L21D6R901 530 aa23.2■■□□□ 1.3
SS18-208ENST00000577751 ASNSP08243 561 aa23.2■■□□□ 1.3
SS18-208ENST00000577751 CYP2D6P10635 497 aa23.2■■□□□ 1.3
SS18-208ENST00000577751 GNAT2P19087 354 aa23.2■■□□□ 1.3
SS18-208ENST00000577751 SHMT1P34896 483 aa23.2■■□□□ 1.3
SS18-208ENST00000577751 CCDC84Q86UT8 332 aaPredicted RBP23.2■■□□□ 1.3
SS18-208ENST00000577751 DDRGK1Q96HY6 314 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms