RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 PPP1R12BO60237 982 aaPredicted RBP20.35■□□□□ 0.85
NUP88-210ENST00000574867 PLCD1P51178 756 aa20.35■□□□□ 0.85
NUP88-210ENST00000574867 PTH1RQ03431 593 aa20.35■□□□□ 0.85
NUP88-210ENST00000574867 MAP4K1Q92918 833 aa20.35■□□□□ 0.85
NUP88-210ENST00000574867 ZNF408Q9H9D4 720 aa20.35■□□□□ 0.85
NUP88-210ENST00000574867 MINDY4BA8MYZ0 360 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 EPB41L2O43491 1005 aaKnown RBP20.34■□□□□ 0.85
NUP88-210ENST00000574867 CELF2O95319 508 aaKnown RBP20.34■□□□□ 0.85
NUP88-210ENST00000574867 CYP2D6P10635 497 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 FKBP1BP68106 108 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 MAP3K10Q02779 954 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 PPARAQ07869 468 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 CYP2D7A0A087X1C5 515 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 SLC3A2P08195 630 aaKnown RBP20.34■□□□□ 0.85
NUP88-210ENST00000574867 C8orf34Q49A92 452 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 ZNF341Q9BYN7 854 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 SWAP70Q9UH65 585 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 ANAPC4Q9UJX5 808 aa20.34■□□□□ 0.85
NUP88-210ENST00000574867 MYH8P13535 1937 aa20.33■□□□□ 0.85
NUP88-210ENST00000574867 GABPAQ06546 454 aa20.33■□□□□ 0.85
NUP88-210ENST00000574867 FMR1Q06787 632 aaKnown RBP eCLIP20.33■□□□□ 0.85
NUP88-210ENST00000574867 IMMTQ16891 758 aaKnown RBP20.33■□□□□ 0.85
NUP88-210ENST00000574867 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.33■□□□□ 0.85
NUP88-210ENST00000574867 GBA2Q9HCG7 927 aaPredicted RBP20.33■□□□□ 0.84
NUP88-210ENST00000574867 RBM8AQ9Y5S9 174 aaKnown RBP20.33■□□□□ 0.84
NUP88-210ENST00000574867 IREB2P48200 963 aaKnown RBP20.32■□□□□ 0.84
NUP88-210ENST00000574867 MAP3K11Q16584 847 aa20.32■□□□□ 0.84
NUP88-210ENST00000574867 C16orf86Q6ZW13 317 aa20.32■□□□□ 0.84
NUP88-210ENST00000574867 MIGA2Q7L4E1 593 aa20.32■□□□□ 0.84
NUP88-210ENST00000574867 ARMC9Q7Z3E5 817 aa20.32■□□□□ 0.84
NUP88-210ENST00000574867 DNAJC18Q9H819 358 aa20.32■□□□□ 0.84
NUP88-210ENST00000574867 ZNF287Q9HBT7 754 aa20.32■□□□□ 0.84
NUP88-210ENST00000574867 OTOFQ9HC10 1997 aa20.32■□□□□ 0.84
NUP88-210ENST00000574867 ZNF213O14771 459 aa20.31■□□□□ 0.84
NUP88-210ENST00000574867 C2orf69Q8N8R5 385 aa20.31■□□□□ 0.84
NUP88-210ENST00000574867 EVX2Q03828 476 aa20.31■□□□□ 0.84
NUP88-210ENST00000574867 TTLL12Q14166 644 aaPredicted RBP20.31■□□□□ 0.84
NUP88-210ENST00000574867 CST9Q5W186 159 aa20.31■□□□□ 0.84
NUP88-210ENST00000574867 PDE4BQ07343 736 aa20.3■□□□□ 0.84
NUP88-210ENST00000574867 ANGEL1Q9UNK9 670 aaKnown RBP20.3■□□□□ 0.84
NUP88-210ENST00000574867 FAM196BA6NMK8 535 aa20.3■□□□□ 0.84
NUP88-210ENST00000574867 PCP11498 1178 aaKnown RBP20.3■□□□□ 0.84
NUP88-210ENST00000574867 KLRG1Q96E93 195 aa20.3■□□□□ 0.84
NUP88-210ENST00000574867 DYNLL2Q96FJ2 89 aa20.3■□□□□ 0.84
NUP88-210ENST00000574867 ZNF112Q9UJU3 913 aa20.3■□□□□ 0.84
NUP88-210ENST00000574867 UNCXA6NJT0 531 aa20.29■□□□□ 0.84
NUP88-210ENST00000574867 USP2O75604 605 aaPredicted RBP20.29■□□□□ 0.84
NUP88-210ENST00000574867 HAND2P61296 217 aa20.29■□□□□ 0.84
NUP88-210ENST00000574867 PRKG1Q13976 671 aa20.29■□□□□ 0.84
NUP88-210ENST00000574867 TATDN1Q6P1N9 297 aa20.29■□□□□ 0.84
NUP88-210ENST00000574867 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.29■□□□□ 0.84
NUP88-210ENST00000574867 WRNIP1Q96S55 665 aa20.29■□□□□ 0.84
NUP88-210ENST00000574867 RNF41Q9H4P4 317 aaPredicted RBP20.29■□□□□ 0.84
NUP88-210ENST00000574867 DOCK1Q14185 1865 aa20.29■□□□□ 0.84
NUP88-210ENST00000574867 TMEM88BA6NKF7 163 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 PHF20L1A8MW92 1017 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 SHMT1P34896 483 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 CDK8P49336 464 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 RNF20Q5VTR2 975 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 SMIM22K7EJ46 135 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 CTDSPL2Q05D32 466 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 NECTIN1Q15223 517 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 SLC44A5Q8NCS7 719 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 STAG1Q8WVM7 1258 aa20.28■□□□□ 0.84
NUP88-210ENST00000574867 ATAD5Q96QE3 1844 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 CYP21A2P08686 494 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 SLURP2P0DP57 97 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 NT5C2P49902 561 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 APLP1P51693 650 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 AKNAD1Q5T1N1 836 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 ANKRD13AQ8IZ07 590 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 NBPF3Q9H094 633 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 MKNK2Q9HBH9 465 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 FZD1Q9UP38 647 aa20.27■□□□□ 0.84
NUP88-210ENST00000574867 TBC1D10CQ8IV04 446 aa20.26■□□□□ 0.83
NUP88-210ENST00000574867 GINM1Q9NU53 330 aa20.26■□□□□ 0.83
NUP88-210ENST00000574867 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.26■□□□□ 0.83
NUP88-210ENST00000574867 CTNND1O60716 968 aaKnown RBP20.26■□□□□ 0.83
NUP88-210ENST00000574867 FGRP09769 529 aa20.26■□□□□ 0.83
NUP88-210ENST00000574867 MAP3K9P80192 1104 aa20.26■□□□□ 0.83
NUP88-210ENST00000574867 CERKLQ49MI3 558 aaPredicted RBP20.26■□□□□ 0.83
NUP88-210ENST00000574867 NOL9Q5SY16 702 aaKnown RBP20.26■□□□□ 0.83
NUP88-210ENST00000574867 CREB3L3Q68CJ9 461 aa20.26■□□□□ 0.83
NUP88-210ENST00000574867 MFSD6Q6ZSS7 791 aa20.26■□□□□ 0.83
NUP88-210ENST00000574867 CCDC17Q96LX7 622 aa20.26■□□□□ 0.83
NUP88-210ENST00000574867 USP26Q9BXU7 913 aa20.26■□□□□ 0.83
NUP88-210ENST00000574867 CSADQ9Y600 493 aa20.26■□□□□ 0.83
NUP88-210ENST00000574867 SLC27A2O14975 620 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 ORC4O43929 436 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 MCCP23508 829 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 CAP2P40123 477 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 LDLRAD1Q5T700 205 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 MOB2Q70IA6 237 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 TLL2Q9Y6L7 1015 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 HSPA4P34932 840 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 SCYL3Q8IZE3 742 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 STK11IPQ8N1F8 1099 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 CREBZFQ9NS37 354 aa20.25■□□□□ 0.83
NUP88-210ENST00000574867 ZKSCAN1P17029 563 aaPredicted RBP20.24■□□□□ 0.83
NUP88-210ENST00000574867 RASA1P20936 1047 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms