RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 RAB11FIP4Q86YS3 637 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 DHX37Q8IY37 1157 aaKnown RBP10.92□□□□□ -0.66
CCDC40-212ENST00000574799 MARCH10Q8NA82 808 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-212ENST00000574799 C8orf76Q96K31 380 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 PCDHA7Q9UN72 937 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 NHSQ6T4R5 1651 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 PALLDQ8WX93 1383 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 SPTLC2O15270 562 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 SYKP43405 635 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 NLRP12P59046 1061 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 TRIM28Q13263 835 aaKnown RBP10.92□□□□□ -0.66
CCDC40-212ENST00000574799 INTS5Q6P9B9 1019 aaKnown RBP10.92□□□□□ -0.66
CCDC40-212ENST00000574799 TADA2BQ86TJ2 420 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 SEC62Q99442 399 aaKnown RBP10.92□□□□□ -0.66
CCDC40-212ENST00000574799 SUGCTQ9HAC7 445 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 ABCB6Q9NP58 842 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 RCOR1Q9UKL0 485 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 ZNF202O95125 648 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 TCIRG1Q13488 830 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 REXO1L1PQ8IX06 675 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 CXorf56Q9H5V9 222 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 TMOD3Q9NYL9 352 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 ZBTB1Q9Y2K1 713 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 KAT6BQ8WYB5 2073 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 CCDC172P0C7W6 258 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 CCT5P48643 541 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 EIF5P55010 431 aaKnown RBP10.91□□□□□ -0.66
CCDC40-212ENST00000574799 EVA1CP58658 441 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 USPL1Q5W0Q7 1092 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 CHST3Q7LGC8 479 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 PTF1AQ7RTS3 328 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 CWC25Q9NXE8 425 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-212ENST00000574799 PSD3Q9NYI0 1048 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 A0A087WUV0 522 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-212ENST00000574799 CTAGE9A4FU28 777 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 VGLL2Q8N8G2 317 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 CCDC148Q8NFR7 591 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 KCNG4Q8TDN1 519 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 PLA2G12BQ9BX93 195 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 KLHL10Q6JEL2 608 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 CCDC70Q6NSX1 233 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 SRGAP1Q7Z6B7 1085 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 HAUS7Q99871 368 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 CEP83Q9Y592 693 aa10.91□□□□□ -0.66
CCDC40-212ENST00000574799 SPATA31A5Q5VU36 1347 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 SPATA31A7Q8IWB4 1347 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 INPP5BP32019 993 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 TOB2Q14106 344 aaPredicted RBP10.9□□□□□ -0.66
CCDC40-212ENST00000574799 CASP8Q14790 479 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 MAP9Q49MG5 647 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 FAM71BQ8TC56 605 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 NOC3LQ8WTT2 800 aaKnown RBP10.9□□□□□ -0.66
CCDC40-212ENST00000574799 TAF5LO75529 589 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 CDR1P51861 262 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 TIMM10P62072 90 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 NKX2-3Q8TAU0 364 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 FAM212AQ96EL1 285 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 IRX2Q9BZI1 471 aaPredicted RBP10.9□□□□□ -0.66
CCDC40-212ENST00000574799 MAP3K15Q6ZN16 1313 aa10.9□□□□□ -0.66
CCDC40-212ENST00000574799 CHD4Q14839 1912 aa10.9□□□□□ -0.67
CCDC40-212ENST00000574799 ITPK1Q13572 414 aa10.9□□□□□ -0.67
CCDC40-212ENST00000574799 RNF187Q5TA31 235 aaPredicted RBP10.9□□□□□ -0.67
CCDC40-212ENST00000574799 FAM89AQ96GI7 184 aa10.9□□□□□ -0.67
CCDC40-212ENST00000574799 FANCLQ9NW38 375 aa10.9□□□□□ -0.67
CCDC40-212ENST00000574799 MRFAP1Q9Y605 127 aa10.9□□□□□ -0.67
CCDC40-212ENST00000574799 RFX7Q2KHR2 1363 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 TMEM232C9JQI7 657 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 PPFIA4O75335 1185 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 CORO7P57737 925 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 SCARF1Q14162 830 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 ADALQ6DHV7 355 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 CCDC129Q6ZRS4 1044 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 NLRP10Q86W26 655 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 JMYQ8N9B5 988 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 RNF40O75150 1001 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 PRR29P0C7W0 189 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 SCRN1Q12765 414 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 NAA16Q6N069 864 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-212ENST00000574799 DPF2Q92785 391 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 BRD2P25440 801 aaKnown RBP10.89□□□□□ -0.67
CCDC40-212ENST00000574799 MAP3K9P80192 1104 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 TRIM65Q6PJ69 517 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 GIGYF2Q6Y7W6 1299 aaKnown RBP10.89□□□□□ -0.67
CCDC40-212ENST00000574799 FAM76AQ8TAV0 307 aa10.89□□□□□ -0.67
CCDC40-212ENST00000574799 ZNF622Q969S3 477 aaKnown RBP eCLIP10.89□□□□□ -0.67
CCDC40-212ENST00000574799 U3KPZ7 1027 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-212ENST00000574799 TNRC6CQ9HCJ0 1690 aaKnown RBP10.89□□□□□ -0.67
CCDC40-212ENST00000574799 VWA3AA6NCI4 1184 aa10.88□□□□□ -0.67
CCDC40-212ENST00000574799 ADORA1P30542 326 aa10.88□□□□□ -0.67
CCDC40-212ENST00000574799 TOGARAM2Q6ZUX3 1019 aa10.88□□□□□ -0.67
CCDC40-212ENST00000574799 JPH2Q9BR39 696 aaPredicted RBP10.88□□□□□ -0.67
CCDC40-212ENST00000574799 NF2P35240 595 aa10.88□□□□□ -0.67
CCDC40-212ENST00000574799 TSR1Q2NL82 804 aaKnown RBP10.88□□□□□ -0.67
CCDC40-212ENST00000574799 FILIP1LQ4L180 1135 aa10.88□□□□□ -0.67
CCDC40-212ENST00000574799 STOX1Q6ZVD7 989 aa10.88□□□□□ -0.67
CCDC40-212ENST00000574799 OTUD6BQ8N6M0 293 aa10.88□□□□□ -0.67
CCDC40-212ENST00000574799 CAPN7Q9Y6W3 813 aa10.88□□□□□ -0.67
CCDC40-212ENST00000574799 CIAO1O76071 339 aa10.88□□□□□ -0.67
CCDC40-212ENST00000574799 PCCAP05165 728 aaPredicted RBP10.88□□□□□ -0.67
CCDC40-212ENST00000574799 CALRP27797 417 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms