RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 SLC9C1Q4G0N8 1177 aa22.19■■□□□ 1.14
CHD3-214ENST00000572579 TREML2Q5T2D2 321 aa22.19■■□□□ 1.14
CHD3-214ENST00000572579 FASTKD5Q7L8L6 764 aaKnown RBP22.19■■□□□ 1.14
CHD3-214ENST00000572579 METTL16Q86W50 562 aaKnown RBP22.19■■□□□ 1.14
CHD3-214ENST00000572579 MAPKAPK5Q8IW41 473 aa22.19■■□□□ 1.14
CHD3-214ENST00000572579 COL2A1P02458 1487 aaPredicted RBP22.19■■□□□ 1.14
CHD3-214ENST00000572579 CAP2P40123 477 aa22.18■■□□□ 1.14
CHD3-214ENST00000572579 GADL1Q6ZQY3 521 aa22.18■■□□□ 1.14
CHD3-214ENST00000572579 PARK7Q99497 189 aaKnown RBP22.18■■□□□ 1.14
CHD3-214ENST00000572579 ZBTB40Q9NUA8 1239 aa22.18■■□□□ 1.14
CHD3-214ENST00000572579 SRRDQ9UH36 339 aa22.18■■□□□ 1.14
CHD3-214ENST00000572579 COG6Q9Y2V7 657 aa22.18■■□□□ 1.14
CHD3-214ENST00000572579 FLT1P17948 1338 aa22.17■■□□□ 1.14
CHD3-214ENST00000572579 SPP2Q13103 211 aa22.17■■□□□ 1.14
CHD3-214ENST00000572579 KIF22Q14807 665 aa22.17■■□□□ 1.14
CHD3-214ENST00000572579 AACSQ86V21 672 aa22.17■■□□□ 1.14
CHD3-214ENST00000572579 IL1RAPL2Q9NP60 686 aa22.17■■□□□ 1.14
CHD3-214ENST00000572579 PI4KBQ9UBF8 816 aa22.17■■□□□ 1.14
CHD3-214ENST00000572579 PALD1Q9ULE6 856 aa22.17■■□□□ 1.14
CHD3-214ENST00000572579 SLC45A1Q9Y2W3 748 aa22.17■■□□□ 1.14
CHD3-214ENST00000572579 DOCK2Q92608 1830 aa22.16■■□□□ 1.14
CHD3-214ENST00000572579 BAG3O95817 575 aa22.16■■□□□ 1.14
CHD3-214ENST00000572579 GNRH1P01148 92 aa22.16■■□□□ 1.14
CHD3-214ENST00000572579 CYP7A1P22680 504 aa22.16■■□□□ 1.14
CHD3-214ENST00000572579 PRPF38BQ5VTL8 546 aaKnown RBP22.16■■□□□ 1.14
CHD3-214ENST00000572579 RHPN1Q8TCX5 695 aa22.16■■□□□ 1.14
CHD3-214ENST00000572579 GABRQQ9UN88 632 aa22.16■■□□□ 1.14
CHD3-214ENST00000572579 FMNL1O95466 1100 aaPredicted RBP22.15■■□□□ 1.14
CHD3-214ENST00000572579 MTFR1Q15390 333 aa22.15■■□□□ 1.14
CHD3-214ENST00000572579 C20orf194Q5TEA3 1177 aa22.15■■□□□ 1.14
CHD3-214ENST00000572579 ZNF280CQ8ND82 737 aa22.15■■□□□ 1.14
CHD3-214ENST00000572579 AGTPBP1Q9UPW5 1226 aa22.15■■□□□ 1.14
CHD3-214ENST00000572579 IDH1O75874 414 aaKnown RBP22.14■■□□□ 1.13
CHD3-214ENST00000572579 SLC34A2O95436 690 aa22.14■■□□□ 1.13
CHD3-214ENST00000572579 PRKCZQ05513 592 aa22.14■■□□□ 1.13
CHD3-214ENST00000572579 NBPF11Q86T75 865 aa22.14■■□□□ 1.13
CHD3-214ENST00000572579 MAGEB6Q8N7X4 407 aa22.14■■□□□ 1.13
CHD3-214ENST00000572579 MIGA1Q8NAN2 632 aa22.14■■□□□ 1.13
CHD3-214ENST00000572579 SAP30BPQ9UHR5 308 aaKnown RBP22.14■■□□□ 1.13
CHD3-214ENST00000572579 HERC5Q9UII4 1024 aaKnown RBP22.14■■□□□ 1.13
CHD3-214ENST00000572579 PHIPQ8WWQ0 1821 aa22.13■■□□□ 1.13
CHD3-214ENST00000572579 PLCG2P16885 1265 aa22.13■■□□□ 1.13
CHD3-214ENST00000572579 PRMT2P55345 433 aa22.13■■□□□ 1.13
CHD3-214ENST00000572579 DHX36Q9H2U1 1008 aaKnown RBP22.13■■□□□ 1.13
CHD3-214ENST00000572579 USP17L5A8MUK1 530 aa22.12■■□□□ 1.13
CHD3-214ENST00000572579 IGSF3O75054 1194 aa22.12■■□□□ 1.13
CHD3-214ENST00000572579 HMGCS2P54868 508 aa22.12■■□□□ 1.13
CHD3-214ENST00000572579 SLC4A8Q2Y0W8 1093 aa22.12■■□□□ 1.13
CHD3-214ENST00000572579 ERC1Q8IUD2 1116 aa22.12■■□□□ 1.13
CHD3-214ENST00000572579 FOXP4Q8IVH2 680 aaPredicted RBP22.12■■□□□ 1.13
CHD3-214ENST00000572579 RPAP2Q8IXW5 612 aaPredicted RBP22.12■■□□□ 1.13
CHD3-214ENST00000572579 NOL10Q9BSC4 688 aaKnown RBP22.12■■□□□ 1.13
CHD3-214ENST00000572579 RCAN3Q9UKA8 241 aa22.12■■□□□ 1.13
CHD3-214ENST00000572579 MYPNQ86TC9 1320 aa22.11■■□□□ 1.13
CHD3-214ENST00000572579 APBB1O00213 710 aa22.11■■□□□ 1.13
CHD3-214ENST00000572579 SH3D19Q5HYK7 790 aa22.11■■□□□ 1.13
CHD3-214ENST00000572579 TMEM106CQ9BVX2 250 aa22.11■■□□□ 1.13
CHD3-214ENST00000572579 SIPA1L1O43166 1804 aa22.1■■□□□ 1.13
CHD3-214ENST00000572579 FCGRTP55899 365 aa22.1■■□□□ 1.13
CHD3-214ENST00000572579 ANKRD13CQ8N6S4 541 aa22.1■■□□□ 1.13
CHD3-214ENST00000572579 PROCA1Q8NCQ7 364 aaPredicted RBP22.1■■□□□ 1.13
CHD3-214ENST00000572579 RIOK1Q9BRS2 568 aaKnown RBP22.1■■□□□ 1.13
CHD3-214ENST00000572579 WDR18Q9BV38 432 aa22.1■■□□□ 1.13
CHD3-214ENST00000572579 MYO5AQ9Y4I1 1855 aaKnown RBP22.1■■□□□ 1.13
CHD3-214ENST00000572579 DOCK1Q14185 1865 aa22.09■■□□□ 1.13
CHD3-214ENST00000572579 GDF11O95390 407 aa22.09■■□□□ 1.13
CHD3-214ENST00000572579 HOXD10P28358 340 aa22.09■■□□□ 1.13
CHD3-214ENST00000572579 GRK4P32298 578 aa22.09■■□□□ 1.13
CHD3-214ENST00000572579 EVX2Q03828 476 aa22.09■■□□□ 1.13
CHD3-214ENST00000572579 RAET1EQ8TD07 263 aa22.09■■□□□ 1.13
CHD3-214ENST00000572579 SHISA4Q96DD7 197 aa22.09■■□□□ 1.13
CHD3-214ENST00000572579 EDC3Q96F86 508 aaKnown RBP22.09■■□□□ 1.13
CHD3-214ENST00000572579 DDX19BQ9UMR2 479 aa22.09■■□□□ 1.13
CHD3-214ENST00000572579 PEX10O60683 326 aa22.08■■□□□ 1.13
CHD3-214ENST00000572579 MS4A1P11836 297 aa22.08■■□□□ 1.13
CHD3-214ENST00000572579 FLT3LGP49771 235 aa22.08■■□□□ 1.13
CHD3-214ENST00000572579 SLFNL1Q499Z3 407 aa22.08■■□□□ 1.13
CHD3-214ENST00000572579 POTEEQ6S8J3 1075 aa22.08■■□□□ 1.13
CHD3-214ENST00000572579 ASCC2Q9H1I8 757 aaPredicted RBP22.08■■□□□ 1.13
CHD3-214ENST00000572579 BACE1P56817 501 aa22.07■■□□□ 1.12
CHD3-214ENST00000572579 MTMR2Q13614 643 aa22.07■■□□□ 1.12
CHD3-214ENST00000572579 HSP90AB4PQ58FF6 505 aa22.07■■□□□ 1.12
CHD3-214ENST00000572579 SMCR8Q8TEV9 937 aaPredicted RBP22.07■■□□□ 1.12
CHD3-214ENST00000572579 KIF1BPQ96EK5 621 aa22.07■■□□□ 1.12
CHD3-214ENST00000572579 PTPRFP10586 1907 aa22.07■■□□□ 1.12
CHD3-214ENST00000572579 TCRBV5S4A2TA0A5A2 114 aa22.06■■□□□ 1.12
CHD3-214ENST00000572579 MAP3K12Q12852 859 aa22.06■■□□□ 1.12
CHD3-214ENST00000572579 TATDN1Q6P1N9 297 aa22.06■■□□□ 1.12
CHD3-214ENST00000572579 TBC1D2Q9BYX2 928 aa22.06■■□□□ 1.12
CHD3-214ENST00000572579 ZBTB21Q9ULJ3 1066 aa22.06■■□□□ 1.12
CHD3-214ENST00000572579 CHGBP05060 677 aa22.05■■□□□ 1.12
CHD3-214ENST00000572579 ASNSP08243 561 aa22.05■■□□□ 1.12
CHD3-214ENST00000572579 PDE6AP16499 860 aa22.05■■□□□ 1.12
CHD3-214ENST00000572579 PLCD1P51178 756 aa22.05■■□□□ 1.12
CHD3-214ENST00000572579 CLASRPQ8N2M8 674 aaKnown RBP22.05■■□□□ 1.12
CHD3-214ENST00000572579 EMILIN3Q9NT22 766 aa22.05■■□□□ 1.12
CHD3-214ENST00000572579 MAST2Q6P0Q8 1798 aa22.04■■□□□ 1.12
CHD3-214ENST00000572579 RBBP6Q7Z6E9 1792 aaKnown RBP22.04■■□□□ 1.12
CHD3-214ENST00000572579 GOLIM4O00461 696 aa22.04■■□□□ 1.12
CHD3-214ENST00000572579 CCL5P13501 91 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms