RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 RHBDL3P58872 404 aa24.78■■□□□ 1.56
VPS53-210ENST00000571456 NBPF11Q86T75 865 aa24.78■■□□□ 1.56
VPS53-210ENST00000571456 APPBP2Q92624 585 aa24.78■■□□□ 1.56
VPS53-210ENST00000571456 DEFB129Q9H1M3 183 aa24.78■■□□□ 1.56
VPS53-210ENST00000571456 AATFQ9NY61 560 aaKnown RBP eCLIP24.78■■□□□ 1.56
VPS53-210ENST00000571456 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.78■■□□□ 1.56
VPS53-210ENST00000571456 FZD1Q9UP38 647 aa24.78■■□□□ 1.56
VPS53-210ENST00000571456 FOCADQ5VW36 1801 aa24.77■■□□□ 1.56
VPS53-210ENST00000571456 MAGEB6P1A0A0J9YX57 407 aa24.77■■□□□ 1.56
VPS53-210ENST00000571456 SLC4A8Q2Y0W8 1093 aa24.77■■□□□ 1.56
VPS53-210ENST00000571456 SLC9C1Q4G0N8 1177 aa24.77■■□□□ 1.56
VPS53-210ENST00000571456 CAP1Q01518 475 aa24.76■■□□□ 1.55
VPS53-210ENST00000571456 MAP3K11Q16584 847 aa24.76■■□□□ 1.55
VPS53-210ENST00000571456 SUPT20HL1Q3ZLR7 823 aa24.76■■□□□ 1.55
VPS53-210ENST00000571456 ADGRA1Q86SQ6 560 aa24.76■■□□□ 1.55
VPS53-210ENST00000571456 FAM151AQ8WW52 585 aa24.76■■□□□ 1.55
VPS53-210ENST00000571456 CLMNQ96JQ2 1002 aa24.76■■□□□ 1.55
VPS53-210ENST00000571456 COL2A1P02458 1487 aaPredicted RBP24.76■■□□□ 1.55
VPS53-210ENST00000571456 CDK5RAP2Q96SN8 1893 aa24.75■■□□□ 1.55
VPS53-210ENST00000571456 RASA3Q14644 834 aa24.75■■□□□ 1.55
VPS53-210ENST00000571456 TEX11Q8IYF3 940 aa24.75■■□□□ 1.55
VPS53-210ENST00000571456 RILPL2Q969X0 211 aa24.75■■□□□ 1.55
VPS53-210ENST00000571456 RIOK1Q9BRS2 568 aaKnown RBP24.75■■□□□ 1.55
VPS53-210ENST00000571456 RBM27Q9P2N5 1060 aaKnown RBP24.75■■□□□ 1.55
VPS53-210ENST00000571456 WDHD1O75717 1129 aaPredicted RBP24.74■■□□□ 1.55
VPS53-210ENST00000571456 CRNKL1Q9BZJ0 848 aaKnown RBP24.74■■□□□ 1.55
VPS53-210ENST00000571456 TCP10L2B9ZVM9 353 aa24.73■■□□□ 1.55
VPS53-210ENST00000571456 UNCXA6NJT0 531 aa24.72■■□□□ 1.55
VPS53-210ENST00000571456 PPP1R12BO60237 982 aaPredicted RBP24.72■■□□□ 1.55
VPS53-210ENST00000571456 GNAT2P19087 354 aa24.72■■□□□ 1.55
VPS53-210ENST00000571456 ARHGEF6Q15052 776 aa24.72■■□□□ 1.55
VPS53-210ENST00000571456 BMP2KLQ5H9B9 411 aa24.72■■□□□ 1.55
VPS53-210ENST00000571456 MIGA1Q8NAN2 632 aa24.72■■□□□ 1.55
VPS53-210ENST00000571456 SH3RF3Q8TEJ3 882 aaPredicted RBP24.72■■□□□ 1.55
VPS53-210ENST00000571456 DHX36Q9H2U1 1008 aaKnown RBP24.72■■□□□ 1.55
VPS53-210ENST00000571456 HELLSQ9NRZ9 838 aa24.72■■□□□ 1.55
VPS53-210ENST00000571456 PTCH2Q9Y6C5 1203 aa24.72■■□□□ 1.55
VPS53-210ENST00000571456 RGS3P49796 1198 aa24.71■■□□□ 1.55
VPS53-210ENST00000571456 ZMYM1Q5SVZ6 1142 aa24.71■■□□□ 1.55
VPS53-210ENST00000571456 FAM198AQ9UFP1 575 aa24.71■■□□□ 1.55
VPS53-210ENST00000571456 TAOK2Q9UL54 1235 aa24.71■■□□□ 1.55
VPS53-210ENST00000571456 ATRNL1Q5VV63 1379 aa24.7■■□□□ 1.55
VPS53-210ENST00000571456 GSPT1P15170 499 aaKnown RBP24.7■■□□□ 1.54
VPS53-210ENST00000571456 NFIAQ12857 509 aa24.7■■□□□ 1.54
VPS53-210ENST00000571456 DDRGK1Q96HY6 314 aa24.7■■□□□ 1.54
VPS53-210ENST00000571456 PTPN18Q99952 460 aa24.7■■□□□ 1.54
VPS53-210ENST00000571456 ATP8A2Q9NTI2 1148 aa24.7■■□□□ 1.54
VPS53-210ENST00000571456 SSC5DA1L4H1 1573 aa24.69■■□□□ 1.54
VPS53-210ENST00000571456 MBD4O95243 580 aa24.69■■□□□ 1.54
VPS53-210ENST00000571456 SDSP20132 328 aa24.69■■□□□ 1.54
VPS53-210ENST00000571456 USP5P45974 858 aa24.69■■□□□ 1.54
VPS53-210ENST00000571456 CACNB3P54284 484 aa24.69■■□□□ 1.54
VPS53-210ENST00000571456 MFAP1P55081 439 aaKnown RBP24.69■■□□□ 1.54
VPS53-210ENST00000571456 DYNLL1P63167 89 aaKnown RBP24.69■■□□□ 1.54
VPS53-210ENST00000571456 DIAPH3Q9NSV4 1193 aa24.69■■□□□ 1.54
VPS53-210ENST00000571456 TESPA1A2RU30 521 aaPredicted RBP24.68■■□□□ 1.54
VPS53-210ENST00000571456 MYCP01106 439 aaPredicted RBP24.68■■□□□ 1.54
VPS53-210ENST00000571456 GIMAP6Q6P9H5 292 aa24.68■■□□□ 1.54
VPS53-210ENST00000571456 TEPSINQ96N21 525 aa24.68■■□□□ 1.54
VPS53-210ENST00000571456 PUS7LQ9H0K6 701 aaKnown RBP24.68■■□□□ 1.54
VPS53-210ENST00000571456 OSBPL5Q9H0X9 879 aaPredicted RBP24.68■■□□□ 1.54
VPS53-210ENST00000571456 MYH1P12882 1939 aa24.68■■□□□ 1.54
VPS53-210ENST00000571456 FLT1P17948 1338 aa24.67■■□□□ 1.54
VPS53-210ENST00000571456 GJA5P36382 358 aa24.67■■□□□ 1.54
VPS53-210ENST00000571456 DCAF15Q66K64 600 aa24.67■■□□□ 1.54
VPS53-210ENST00000571456 LCORLQ8N3X6 602 aa24.67■■□□□ 1.54
VPS53-210ENST00000571456 TGFBRAP1Q8WUH2 860 aa24.67■■□□□ 1.54
VPS53-210ENST00000571456 DPF3Q92784 378 aa24.67■■□□□ 1.54
VPS53-210ENST00000571456 OSBP2Q969R2 916 aa24.67■■□□□ 1.54
VPS53-210ENST00000571456 TMEM39BQ9GZU3 492 aa24.67■■□□□ 1.54
VPS53-210ENST00000571456 LAMA3Q16787 3333 aa24.66■■□□□ 1.54
VPS53-210ENST00000571456 GPAA1O43292 621 aa24.66■■□□□ 1.54
VPS53-210ENST00000571456 TCP10Q12799 353 aa24.66■■□□□ 1.54
VPS53-210ENST00000571456 PICALMQ13492 652 aa24.66■■□□□ 1.54
VPS53-210ENST00000571456 MCMDC2Q4G0Z9 681 aa24.66■■□□□ 1.54
VPS53-210ENST00000571456 RUFY2Q8WXA3 655 aa24.66■■□□□ 1.54
VPS53-210ENST00000571456 STRBPQ96SI9 672 aaKnown RBP24.66■■□□□ 1.54
VPS53-210ENST00000571456 ARMT1Q9H993 441 aa24.66■■□□□ 1.54
VPS53-210ENST00000571456 DDX4Q9NQI0 724 aaKnown RBP24.66■■□□□ 1.54
VPS53-210ENST00000571456 NAV1Q8NEY1 1877 aa24.66■■□□□ 1.54
VPS53-210ENST00000571456 IREB2P48200 963 aaKnown RBP24.65■■□□□ 1.54
VPS53-210ENST00000571456 ZSCAN29Q8IWY8 852 aaPredicted RBP24.65■■□□□ 1.54
VPS53-210ENST00000571456 AMOTL1Q8IY63 956 aa24.65■■□□□ 1.54
VPS53-210ENST00000571456 RAD50Q92878 1312 aa24.64■■□□□ 1.54
VPS53-210ENST00000571456 TTC6Q86TZ1 520 aa24.64■■□□□ 1.54
VPS53-210ENST00000571456 PI4KBQ9UBF8 816 aa24.64■■□□□ 1.54
VPS53-210ENST00000571456 TBC1D12O60347 775 aa24.63■■□□□ 1.53
VPS53-210ENST00000571456 HLA-DOAP06340 250 aa24.63■■□□□ 1.53
VPS53-210ENST00000571456 NBPF12Q5TAG4 269 aaPredicted RBP24.63■■□□□ 1.53
VPS53-210ENST00000571456 MAPKAPK5Q8IW41 473 aa24.63■■□□□ 1.53
VPS53-210ENST00000571456 SH3TC2Q8TF17 1288 aa24.63■■□□□ 1.53
VPS53-210ENST00000571456 NACAP1Q9BZK3 213 aa24.63■■□□□ 1.53
VPS53-210ENST00000571456 PRO3102Q9H379 93 aa24.63■■□□□ 1.53
VPS53-210ENST00000571456 HERC5Q9UII4 1024 aaKnown RBP24.63■■□□□ 1.53
VPS53-210ENST00000571456 SLC4A4Q9Y6R1 1079 aa24.63■■□□□ 1.53
VPS53-210ENST00000571456 OTOFQ9HC10 1997 aa24.62■■□□□ 1.53
VPS53-210ENST00000571456 DDX60LQ5H9U9 1706 aaKnown RBP24.62■■□□□ 1.53
VPS53-210ENST00000571456 MNX1P50219 401 aaPredicted RBP24.62■■□□□ 1.53
VPS53-210ENST00000571456 FOXP4Q8IVH2 680 aaPredicted RBP24.62■■□□□ 1.53
VPS53-210ENST00000571456 ANKRD13AQ8IZ07 590 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms