RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 PCDHA7Q9UN72 937 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 CSGALNACT2Q8N6G5 542 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 FAM13AO94988 1023 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 HIBADHP31937 336 aaKnown RBP17.25■□□□□ 0.35
CIITA-204ENST00000570546 DNAJC10Q8IXB1 793 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 SCLT1Q96NL6 688 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 PYCARDQ9ULZ3 195 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 NSFL1CQ9UNZ2 370 aaKnown RBP17.25■□□□□ 0.35
CIITA-204ENST00000570546 CROCC2H7BZ55 1655 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 CCNT1O60563 726 aaKnown RBP17.25■□□□□ 0.35
CIITA-204ENST00000570546 TCIRG1Q13488 830 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 AKNAD1Q5T1N1 836 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 USP6P35125 1406 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 ZMYM6O95789 1325 aa17.25■□□□□ 0.35
CIITA-204ENST00000570546 MNAT1P51948 309 aa17.24■□□□□ 0.35
CIITA-204ENST00000570546 PAF1Q8N7H5 531 aa17.24■□□□□ 0.35
CIITA-204ENST00000570546 PHF23Q9BUL5 403 aaPredicted RBP17.24■□□□□ 0.35
CIITA-204ENST00000570546 PDIA3P30101 505 aaKnown RBP17.24■□□□□ 0.35
CIITA-204ENST00000570546 TNNC1P63316 161 aa17.24■□□□□ 0.35
CIITA-204ENST00000570546 DNAJC21Q5F1R6 531 aaKnown RBP17.24■□□□□ 0.35
CIITA-204ENST00000570546 CPSF1Q10570 1443 aaKnown RBP17.24■□□□□ 0.35
CIITA-204ENST00000570546 EBAG9O00559 213 aa17.24■□□□□ 0.35
CIITA-204ENST00000570546 CCDC65Q8IXS2 484 aa17.24■□□□□ 0.35
CIITA-204ENST00000570546 COPRSQ9NQ92 184 aa17.24■□□□□ 0.35
CIITA-204ENST00000570546 RTCBQ9Y3I0 505 aaKnown RBP17.24■□□□□ 0.35
CIITA-204ENST00000570546 TRAF5O00463 557 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 CMA1P23946 247 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 KRBA2Q6ZNG9 492 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 NELFBQ8WX92 580 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 VPS54Q9P1Q0 977 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 NEBLO76041 1014 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 LRRC24Q50LG9 513 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 NAP1L4Q99733 375 aaKnown RBP17.23■□□□□ 0.35
CIITA-204ENST00000570546 NUP58Q9BVL2 599 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 TMEM110-MUSTN1A8MSY1 372 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 NDUFA8P51970 172 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 USP37Q86T82 979 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 MICALL1Q8N3F8 863 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 ERVV-2B6SEH9 535 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 ADKP55263 362 aaKnown RBP17.23■□□□□ 0.35
CIITA-204ENST00000570546 NSRP1Q9H0G5 558 aaKnown RBP17.23■□□□□ 0.35
CIITA-204ENST00000570546 AATFQ9NY61 560 aaKnown RBP eCLIP17.23■□□□□ 0.35
CIITA-204ENST00000570546 DBNLQ9UJU6 430 aaKnown RBP17.23■□□□□ 0.35
CIITA-204ENST00000570546 CLIC4Q9Y696 253 aa17.23■□□□□ 0.35
CIITA-204ENST00000570546 LONRF3Q496Y0 759 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 NOSTRINQ8IVI9 506 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 hCG_1642624A0A1W2PR95 340 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 KRT9P35527 623 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 CTSWP56202 376 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 TTLL7Q6ZT98 887 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 ZNF589Q86UQ0 364 aaPredicted RBP17.22■□□□□ 0.35
CIITA-204ENST00000570546 TEX11Q8IYF3 940 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 TDRD7Q8NHU6 1098 aaKnown RBP17.22■□□□□ 0.35
CIITA-204ENST00000570546 BLZF1Q9H2G9 400 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 ZEB2O60315 1214 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 PPARAQ07869 468 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 CFAP58Q5T655 872 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 DNAI2Q9GZS0 605 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 AFAP1L1Q8TED9 768 aa17.22■□□□□ 0.35
CIITA-204ENST00000570546 HECW2Q9P2P5 1572 aa17.21■□□□□ 0.35
CIITA-204ENST00000570546 CDC25BP30305 580 aa17.21■□□□□ 0.35
CIITA-204ENST00000570546 FGAP02671 866 aa17.21■□□□□ 0.35
CIITA-204ENST00000570546 DCAF17Q5H9S7 520 aaPredicted RBP17.21■□□□□ 0.35
CIITA-204ENST00000570546 DDX17Q92841 729 aaKnown RBP17.21■□□□□ 0.35
CIITA-204ENST00000570546 RAPGEF1Q13905 1077 aa17.21■□□□□ 0.35
CIITA-204ENST00000570546 HS2ST1Q7LGA3 356 aa17.21■□□□□ 0.35
CIITA-204ENST00000570546 STAMQ92783 540 aa17.21■□□□□ 0.35
CIITA-204ENST00000570546 STMN4Q9H169 189 aaPredicted RBP17.21■□□□□ 0.35
CIITA-204ENST00000570546 ADD1P35611 737 aaKnown RBP17.21■□□□□ 0.34
CIITA-204ENST00000570546 RBM6P78332 1123 aaKnown RBP17.21■□□□□ 0.34
CIITA-204ENST00000570546 ZNF654Q8IZM8 581 aa17.21■□□□□ 0.34
CIITA-204ENST00000570546 DDX12PQ92771 950 aa17.21■□□□□ 0.34
CIITA-204ENST00000570546 SECISBP2LQ93073 1101 aaKnown RBP17.21■□□□□ 0.34
CIITA-204ENST00000570546 GPCPD1Q9NPB8 672 aa17.21■□□□□ 0.34
CIITA-204ENST00000570546 PLEKHG1Q9ULL1 1385 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 TXKP42681 527 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 TICAM2Q86XR7 235 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 SLF1Q9BQI6 1058 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 MADDQ8WXG6 1647 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 A0A1W2PRG0 241 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 RPL13P26373 211 aaKnown RBP17.2■□□□□ 0.34
CIITA-204ENST00000570546 IFNL3Q8IZI9 196 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 ROBO2Q9HCK4 1378 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 KIF4AO95239 1232 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 GPATCH11Q8N954 259 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 SELENOSQ9BQE4 189 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 CCDC87Q9NVE4 849 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 RTEL1Q9NZ71 1219 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 NRBP1Q9UHY1 535 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 WWC3Q9ULE0 1092 aa17.2■□□□□ 0.34
CIITA-204ENST00000570546 POLA2Q14181 598 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 PRR36Q9H6K5 1346 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 LARGE1O95461 756 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 CYP21A2P08686 494 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 ZMYM1Q5SVZ6 1142 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 CCDC121Q6ZUS5 278 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 ZC3H12CQ9C0D7 883 aaKnown RBP17.19■□□□□ 0.34
CIITA-204ENST00000570546 SPHKAPQ2M3C7 1700 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 A0A1W2PQ27 194 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 A0A1W2PQ64 194 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms