RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SH3BP5LQ7L8J4 393 aa22.73■■□□□ 1.23
CLK3-227ENST00000570296 ZSCAN29Q8IWY8 852 aaPredicted RBP22.73■■□□□ 1.23
CLK3-227ENST00000570296 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.73■■□□□ 1.23
CLK3-227ENST00000570296 RFX7Q2KHR2 1363 aa22.73■■□□□ 1.23
CLK3-227ENST00000570296 IFIT1P09914 478 aaKnown RBP22.72■■□□□ 1.23
CLK3-227ENST00000570296 LRRC24Q50LG9 513 aa22.72■■□□□ 1.23
CLK3-227ENST00000570296 CCDC84Q86UT8 332 aaPredicted RBP22.72■■□□□ 1.23
CLK3-227ENST00000570296 TBC1D2Q9BYX2 928 aa22.72■■□□□ 1.23
CLK3-227ENST00000570296 MYH2Q9UKX2 1941 aa22.71■■□□□ 1.23
CLK3-227ENST00000570296 PRDX5P30044 214 aa22.71■■□□□ 1.23
CLK3-227ENST00000570296 PDE3AQ14432 1141 aa22.71■■□□□ 1.23
CLK3-227ENST00000570296 PUM3Q15397 648 aaKnown RBP22.71■■□□□ 1.23
CLK3-227ENST00000570296 PIEZO1Q92508 2521 aa22.7■■□□□ 1.22
CLK3-227ENST00000570296 LDHBP07195 334 aaKnown RBP22.7■■□□□ 1.22
CLK3-227ENST00000570296 HMGCS2P54868 508 aa22.7■■□□□ 1.22
CLK3-227ENST00000570296 MAP3K12Q12852 859 aa22.7■■□□□ 1.22
CLK3-227ENST00000570296 SPP2Q13103 211 aa22.7■■□□□ 1.22
CLK3-227ENST00000570296 USP38Q8NB14 1042 aa22.7■■□□□ 1.22
CLK3-227ENST00000570296 ZNF280CQ8ND82 737 aa22.7■■□□□ 1.22
CLK3-227ENST00000570296 USP6NLQ92738 828 aa22.7■■□□□ 1.22
CLK3-227ENST00000570296 KAZALD1Q96I82 304 aa22.7■■□□□ 1.22
CLK3-227ENST00000570296 ATAD5Q96QE3 1844 aa22.7■■□□□ 1.22
CLK3-227ENST00000570296 RLFQ13129 1914 aa22.69■■□□□ 1.22
CLK3-227ENST00000570296 DDTLA6NHG4 134 aaPredicted RBP22.69■■□□□ 1.22
CLK3-227ENST00000570296 ALDH1L1O75891 902 aa22.69■■□□□ 1.22
CLK3-227ENST00000570296 FGFR2P21802 821 aa22.69■■□□□ 1.22
CLK3-227ENST00000570296 MAPK4P31152 587 aa22.69■■□□□ 1.22
CLK3-227ENST00000570296 RGS2P41220 211 aa22.69■■□□□ 1.22
CLK3-227ENST00000570296 RTP1P59025 263 aa22.69■■□□□ 1.22
CLK3-227ENST00000570296 SUCLG2Q96I99 432 aa22.69■■□□□ 1.22
CLK3-227ENST00000570296 TBC1D12O60347 775 aa22.68■■□□□ 1.22
CLK3-227ENST00000570296 ATN1P54259 1190 aaPredicted RBP22.68■■□□□ 1.22
CLK3-227ENST00000570296 GPRC5AQ8NFJ5 357 aa22.68■■□□□ 1.22
CLK3-227ENST00000570296 APBA2Q99767 749 aa22.68■■□□□ 1.22
CLK3-227ENST00000570296 SALL1Q9NSC2 1324 aa22.67■■□□□ 1.22
CLK3-227ENST00000570296 SLURP2P0DP57 97 aa22.67■■□□□ 1.22
CLK3-227ENST00000570296 SH3D19Q5HYK7 790 aa22.67■■□□□ 1.22
CLK3-227ENST00000570296 ATXN2LQ8WWM7 1075 aaKnown RBP22.67■■□□□ 1.22
CLK3-227ENST00000570296 OSBPL5Q9H0X9 879 aaPredicted RBP22.67■■□□□ 1.22
CLK3-227ENST00000570296 DNM1LO00429 736 aa22.66■■□□□ 1.22
CLK3-227ENST00000570296 MSCO60682 206 aa22.66■■□□□ 1.22
CLK3-227ENST00000570296 IRX3P78415 501 aaPredicted RBP22.66■■□□□ 1.22
CLK3-227ENST00000570296 CCL14Q16627 93 aa22.66■■□□□ 1.22
CLK3-227ENST00000570296 RABL6Q3YEC7 729 aaPredicted RBP22.66■■□□□ 1.22
CLK3-227ENST00000570296 GAKO14976 1311 aa22.65■■□□□ 1.22
CLK3-227ENST00000570296 SLC5A1P13866 664 aa22.65■■□□□ 1.22
CLK3-227ENST00000570296 MORN1Q5T089 497 aa22.65■■□□□ 1.22
CLK3-227ENST00000570296 LPAR1Q92633 364 aa22.65■■□□□ 1.22
CLK3-227ENST00000570296 LPIN2Q92539 896 aa22.64■■□□□ 1.21
CLK3-227ENST00000570296 BADQ92934 168 aa22.64■■□□□ 1.21
CLK3-227ENST00000570296 SRCIN1Q9C0H9 1055 aa22.64■■□□□ 1.21
CLK3-227ENST00000570296 TXNRD2Q9NNW7 524 aa22.64■■□□□ 1.21
CLK3-227ENST00000570296 DDX4Q9NQI0 724 aaKnown RBP22.64■■□□□ 1.21
CLK3-227ENST00000570296 DDX20Q9UHI6 824 aaKnown RBP22.64■■□□□ 1.21
CLK3-227ENST00000570296 ATP11BQ9Y2G3 1177 aa22.64■■□□□ 1.21
CLK3-227ENST00000570296 ARIH1Q9Y4X5 557 aaPredicted RBP22.64■■□□□ 1.21
CLK3-227ENST00000570296 IL16Q14005 1332 aa22.63■■□□□ 1.21
CLK3-227ENST00000570296 SYNGAP1Q96PV0 1343 aa22.63■■□□□ 1.21
CLK3-227ENST00000570296 HOXA7P31268 230 aaPredicted RBP22.63■■□□□ 1.21
CLK3-227ENST00000570296 GRIN2CQ14957 1233 aa22.63■■□□□ 1.21
CLK3-227ENST00000570296 GPR142Q7Z601 462 aa22.63■■□□□ 1.21
CLK3-227ENST00000570296 ADAMTS19Q8TE59 1207 aa22.63■■□□□ 1.21
CLK3-227ENST00000570296 P2RX7Q99572 595 aaKnown RBP22.63■■□□□ 1.21
CLK3-227ENST00000570296 BICC1Q9H694 974 aaKnown RBP22.63■■□□□ 1.21
CLK3-227ENST00000570296 USP17L5A8MUK1 530 aa22.62■■□□□ 1.21
CLK3-227ENST00000570296 VAMP4O75379 141 aa22.62■■□□□ 1.21
CLK3-227ENST00000570296 HERVK_113P62684 666 aa22.62■■□□□ 1.21
CLK3-227ENST00000570296 CCDC27Q2M243 656 aa22.62■■□□□ 1.21
CLK3-227ENST00000570296 MFSD14CQ5VZR4 134 aa22.62■■□□□ 1.21
CLK3-227ENST00000570296 PLEKHH3Q7Z736 793 aa22.62■■□□□ 1.21
CLK3-227ENST00000570296 CCAR1Q8IX12 1150 aaKnown RBP22.62■■□□□ 1.21
CLK3-227ENST00000570296 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.62■■□□□ 1.21
CLK3-227ENST00000570296 AS3MTQ9HBK9 375 aa22.62■■□□□ 1.21
CLK3-227ENST00000570296 PRDM5Q9NQX1 630 aaPredicted RBP22.62■■□□□ 1.21
CLK3-227ENST00000570296 MYO9BQ13459 2157 aa22.62■■□□□ 1.21
CLK3-227ENST00000570296 UTYO14607 1347 aa22.61■■□□□ 1.21
CLK3-227ENST00000570296 NBPF7P0C2Y1 421 aaPredicted RBP22.61■■□□□ 1.21
CLK3-227ENST00000570296 PICALMQ13492 652 aa22.61■■□□□ 1.21
CLK3-227ENST00000570296 GTF3C2Q8WUA4 911 aaPredicted RBP22.61■■□□□ 1.21
CLK3-227ENST00000570296 ASB2Q96Q27 587 aa22.61■■□□□ 1.21
CLK3-227ENST00000570296 GNL3LQ9NVN8 582 aaKnown RBP22.61■■□□□ 1.21
CLK3-227ENST00000570296 NPM3O75607 178 aaKnown RBP22.6■■□□□ 1.21
CLK3-227ENST00000570296 ERVK-9P63128 1117 aa22.6■■□□□ 1.21
CLK3-227ENST00000570296 ERVK-24P63145 666 aa22.6■■□□□ 1.21
CLK3-227ENST00000570296 ANKRD44Q8N8A2 993 aa22.6■■□□□ 1.21
CLK3-227ENST00000570296 UHRF1Q96T88 793 aaPredicted RBP22.6■■□□□ 1.21
CLK3-227ENST00000570296 THEGQ9P2T0 379 aa22.6■■□□□ 1.21
CLK3-227ENST00000570296 RBPJLQ9UBG7 517 aa22.6■■□□□ 1.21
CLK3-227ENST00000570296 SEMA3EO15041 775 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 PEX10O60683 326 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 CAP2P40123 477 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 MAP2K5Q13163 448 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 SLC39A5Q6ZMH5 540 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 WWC1Q8IX03 1113 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 SLF2Q8IX21 1173 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 ZGPATQ8N5A5 531 aaKnown RBP22.59■■□□□ 1.21
CLK3-227ENST00000570296 FAM163AQ96GL9 167 aaPredicted RBP22.59■■□□□ 1.21
CLK3-227ENST00000570296 RNPC3Q96LT9 517 aaKnown RBP22.59■■□□□ 1.21
CLK3-227ENST00000570296 C1QTNF1Q9BXJ1 281 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 PORCNQ9H237 461 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms