RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 SEZ6L2Q6UXD5 910 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 MPRIPQ6WCQ1 1025 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 ZDHHC13Q8IUH4 622 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 CRELD1Q96HD1 420 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 FANCD2OSQ96PS1 177 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 NOC4LQ9BVI4 516 aaKnown RBP5.33□□□□□ -1.56
VPS39-212ENST00000570023 BCL2L13Q9BXK5 485 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 KRTAP4-6Q9BYQ5 205 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 TSPYL1Q9H0U9 437 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 ATXN3LQ9H3M9 355 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 SEMA6CQ9H3T2 930 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 CBX8Q9HC52 389 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 AP4E1Q9UPM8 1137 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 PRR19A6NJB7 356 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 TTC36A6NLP5 189 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 NFICP08651 508 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 MFAP1P55081 439 aaKnown RBP5.32□□□□□ -1.56
VPS39-212ENST00000570023 ANAPC15P60006 121 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 RING1Q06587 406 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 MEI1Q5TIA1 1274 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 FAM43BQ6ZT52 329 aaPredicted RBP5.32□□□□□ -1.56
VPS39-212ENST00000570023 NBPF11Q86T75 865 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 GPATCH11Q8N954 259 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 GATA6Q92908 595 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 PRKAG2Q9UGJ0 569 aa5.32□□□□□ -1.56
VPS39-212ENST00000570023 RLBP1P12271 317 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 RAB6AP20340 208 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 NFKBIBQ15653 356 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 CPSF6Q16630 551 aaKnown RBP eCLIP5.31□□□□□ -1.56
VPS39-212ENST00000570023 HSP90AB3PQ58FF7 597 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 ARTNQ5T4W7 220 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 TTBK2Q6IQ55 1244 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 AGMOQ6ZNB7 445 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 SHKBP1Q8TBC3 707 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 GIPC2Q8TF65 315 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 C1GALT1Q9NS00 363 aa5.31□□□□□ -1.56
VPS39-212ENST00000570023 ADMP35318 185 aa5.3□□□□□ -1.56
VPS39-212ENST00000570023 PTPN11Q06124 597 aaPredicted RBP5.3□□□□□ -1.56
VPS39-212ENST00000570023 MRPL58Q14197 206 aaKnown RBP5.3□□□□□ -1.56
VPS39-212ENST00000570023 ZAR1Q86SH2 424 aa5.3□□□□□ -1.56
VPS39-212ENST00000570023 SMYD4Q8IYR2 804 aaPredicted RBP5.3□□□□□ -1.56
VPS39-212ENST00000570023 RNF214Q8ND24 703 aa5.3□□□□□ -1.56
VPS39-212ENST00000570023 GAL3ST3Q96A11 431 aa5.3□□□□□ -1.56
VPS39-212ENST00000570023 ACSBG1Q96GR2 724 aa5.3□□□□□ -1.56
VPS39-212ENST00000570023 MFSD14AQ96MC6 490 aa5.3□□□□□ -1.56
VPS39-212ENST00000570023 MRS2Q9HD23 443 aa5.3□□□□□ -1.56
VPS39-212ENST00000570023 WDR64B1ANS9 1081 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 DYNC1LI2O43237 492 aaPredicted RBP5.29□□□□□ -1.56
VPS39-212ENST00000570023 TGFB1P01137 390 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 F13BP05160 661 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 ZNF16P17020 682 aaPredicted RBP5.29□□□□□ -1.56
VPS39-212ENST00000570023 ZSCAN20P17040 1043 aaPredicted RBP5.29□□□□□ -1.56
VPS39-212ENST00000570023 NTF4P34130 210 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 CD97P48960 835 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 LIG3P49916 1009 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 LRP8Q14114 963 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 TTLL4Q14679 1199 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 TMED8Q6PL24 325 aaPredicted RBP5.29□□□□□ -1.56
VPS39-212ENST00000570023 CERS3Q8IU89 383 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 EGFL6Q8IUX8 553 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 SHISA5Q8N114 240 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 Q8N3U1 123 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 GIMAP7Q8NHV1 300 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 PIDD1Q9HB75 910 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 SLC52A1Q9NWF4 448 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 VTI1BQ9UEU0 232 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 PCOLCE2Q9UKZ9 415 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 ISY1Q9ULR0 285 aaKnown RBP5.29□□□□□ -1.56
VPS39-212ENST00000570023 PCDHA4Q9UN74 947 aa5.29□□□□□ -1.56
VPS39-212ENST00000570023 RBM47A0AV96 593 aaKnown RBP5.28□□□□□ -1.56
VPS39-212ENST00000570023 FANCGO15287 622 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 HYAL3O43820 417 aaPredicted RBP5.28□□□□□ -1.56
VPS39-212ENST00000570023 COBLO75128 1261 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 HCLS1P14317 486 aaPredicted RBP5.28□□□□□ -1.56
VPS39-212ENST00000570023 OS9Q13438 667 aaPredicted RBP5.28□□□□□ -1.56
VPS39-212ENST00000570023 NBPF9Q3BBW0 867 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 INTS5Q6P9B9 1019 aaKnown RBP5.28□□□□□ -1.56
VPS39-212ENST00000570023 OGFOD3Q6PK18 319 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 CASC1Q6TDU7 716 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 CYFIP1Q7L576 1253 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 CCDC84Q86UT8 332 aaPredicted RBP5.28□□□□□ -1.56
VPS39-212ENST00000570023 PHC3Q8NDX5 983 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 ISL2Q96A47 359 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 TBC1D32Q96NH3 1257 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 METTL22Q9BUU2 404 aaPredicted RBP5.28□□□□□ -1.56
VPS39-212ENST00000570023 PRDM16Q9HAZ2 1276 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 ATG3Q9NT62 314 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 RBM28Q9NW13 759 aaKnown RBP5.28□□□□□ -1.56
VPS39-212ENST00000570023 ZHX1Q9UKY1 873 aaPredicted RBP5.28□□□□□ -1.56
VPS39-212ENST00000570023 DAGLAQ9Y4D2 1042 aa5.28□□□□□ -1.56
VPS39-212ENST00000570023 VGLL3A8MV65 326 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 KIAA1324LA8MWY0 1029 aaPredicted RBP5.27□□□□□ -1.57
VPS39-212ENST00000570023 TFE3P19532 575 aaPredicted RBP5.27□□□□□ -1.57
VPS39-212ENST00000570023 CYP27A1Q02318 531 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 INPP5AQ14642 412 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 PPM1JQ5JR12 505 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 ZBTB37Q5TC79 503 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 LRFN4Q6PJG9 635 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 HDXQ7Z353 690 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 C12orf40Q86WS4 652 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms