RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 FAM229AH3BQW9 127 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 NTF4P34130 210 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 CASP7P55210 303 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 DPH2Q9BQC3 489 aaPredicted RBP8.5□□□□□ -1.05
UBR1-208ENST00000569066 SLC22A31A6NKX4 558 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 DDAH1O94760 285 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 GUCY2CP25092 1073 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 AKAP4Q5JQC9 854 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 TRAPPC3LQ5T215 181 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 UBE3DQ7Z6J8 389 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 ACSF2Q96CM8 615 aaPredicted RBP8.5□□□□□ -1.05
UBR1-208ENST00000569066 ATG4CQ96DT6 458 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 TRIM11Q96F44 468 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 SNCAIPQ9Y6H5 919 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 LTBP3Q9NS15 1303 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 CHURC1-FNTBB4DL54 471 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 PGRP06401 933 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 RING1Q06587 406 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 SPATC1Q76KD6 591 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 OR6P1Q8NGX9 317 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 SH3TC2Q8TF17 1288 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 SLC9A7Q96T83 725 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 GMIPQ9P107 970 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 RBAK-RBAKDNI3L0D1 243 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 ETF1P62495 437 aaKnown RBP8.49□□□□□ -1.05
UBR1-208ENST00000569066 SNRPNP63162 240 aaKnown RBP8.49□□□□□ -1.05
UBR1-208ENST00000569066 ARSHQ5FYA8 562 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 DIEXFQ68CQ4 756 aaKnown RBP8.49□□□□□ -1.05
UBR1-208ENST00000569066 FBRSQ9HAH7 460 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 RRAGCQ9HB90 399 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 PFDN2Q9UHV9 154 aa8.49□□□□□ -1.05
UBR1-208ENST00000569066 TMPRSS2O15393 492 aa8.48□□□□□ -1.05
UBR1-208ENST00000569066 PDPK1O15530 556 aa8.48□□□□□ -1.05
UBR1-208ENST00000569066 CANXP27824 592 aaKnown RBP8.48□□□□□ -1.05
UBR1-208ENST00000569066 NKG7Q16617 165 aa8.48□□□□□ -1.05
UBR1-208ENST00000569066 ZSCAN1Q8NBB4 408 aa8.48□□□□□ -1.05
UBR1-208ENST00000569066 FAM86C1Q9NVL1 165 aa8.48□□□□□ -1.05
UBR1-208ENST00000569066 PPM1GO15355 546 aaPredicted RBP8.47□□□□□ -1.05
UBR1-208ENST00000569066 DRD2P14416 443 aa8.47□□□□□ -1.05
UBR1-208ENST00000569066 HSP90B1P14625 803 aaKnown RBP8.47□□□□□ -1.05
UBR1-208ENST00000569066 FXNQ16595 210 aa8.47□□□□□ -1.05
UBR1-208ENST00000569066 NLRC3Q7RTR2 1065 aa8.47□□□□□ -1.05
UBR1-208ENST00000569066 TM9SF2Q99805 663 aa8.47□□□□□ -1.05
UBR1-208ENST00000569066 RAD18Q9NS91 495 aa8.47□□□□□ -1.05
UBR1-208ENST00000569066 A0A0A0MRY4 1105 aa8.47□□□□□ -1.05
UBR1-208ENST00000569066 DIAPH1O60610 1272 aaKnown RBP8.47□□□□□ -1.05
UBR1-208ENST00000569066 NME1P15531 152 aaKnown RBP8.47□□□□□ -1.05
UBR1-208ENST00000569066 DUOXA2Q1HG44 320 aa8.47□□□□□ -1.05
UBR1-208ENST00000569066 UNC5AQ6ZN44 842 aa8.47□□□□□ -1.05
UBR1-208ENST00000569066 AP4E1Q9UPM8 1137 aa8.47□□□□□ -1.05
UBR1-208ENST00000569066 HCLS1P14317 486 aaPredicted RBP8.46□□□□□ -1.05
UBR1-208ENST00000569066 FMR1NBQ8N0W7 255 aaPredicted RBP8.46□□□□□ -1.05
UBR1-208ENST00000569066 C19orf47Q8N9M1 422 aaKnown RBP8.46□□□□□ -1.06
UBR1-208ENST00000569066 CCDC113Q9H0I3 377 aa8.46□□□□□ -1.06
UBR1-208ENST00000569066 TJP2Q9UDY2 1190 aa8.46□□□□□ -1.06
UBR1-208ENST00000569066 ID3Q02535 119 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 MTERF2Q49AM1 385 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 LCE2AQ5TA79 106 aaPredicted RBP8.45□□□□□ -1.06
UBR1-208ENST00000569066 ZBTB37Q5TC79 503 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 KIAA1211Q6ZU35 1233 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 FAM178BQ8IXR5 827 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 AGGF1Q8N302 714 aaeCLIP8.45□□□□□ -1.06
UBR1-208ENST00000569066 TMPRSS13Q9BYE2 586 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 WNT10AQ9GZT5 417 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 PICK1Q9NRD5 415 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 DISC1Q9NRI5 854 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 LEMD3Q9Y2U8 911 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 ESYT3A0FGR9 886 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 NEFMP07197 916 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 PDE4BQ07343 736 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 RASGRF1Q13972 1273 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 TMEM201Q5SNT2 666 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 ACAD11Q709F0 780 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 GPATCH3Q96I76 525 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 FANCD2OSQ96PS1 177 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 CNNM2Q9H8M5 875 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 FANCLQ9NW38 375 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 CRIM1Q9NZV1 1036 aa8.45□□□□□ -1.06
UBR1-208ENST00000569066 SLFN14P0C7P3 912 aa8.44□□□□□ -1.06
UBR1-208ENST00000569066 ERVK-24P63145 666 aa8.44□□□□□ -1.06
UBR1-208ENST00000569066 TTLL4Q14679 1199 aa8.44□□□□□ -1.06
UBR1-208ENST00000569066 LRRFIP1Q32MZ4 808 aaKnown RBP8.44□□□□□ -1.06
UBR1-208ENST00000569066 EXOSC6Q5RKV6 272 aaKnown RBP8.44□□□□□ -1.06
UBR1-208ENST00000569066 SHISA2Q6UWI4 295 aa8.44□□□□□ -1.06
UBR1-208ENST00000569066 MAP4K3Q8IVH8 894 aa8.44□□□□□ -1.06
UBR1-208ENST00000569066 RUSC1Q9BVN2 902 aa8.44□□□□□ -1.06
UBR1-208ENST00000569066 CHMP4BP1P59074 171 aa8.43□□□□□ -1.06
UBR1-208ENST00000569066 SQSTM1Q13501 440 aa8.43□□□□□ -1.06
UBR1-208ENST00000569066 CDCP2Q5VXM1 449 aa8.43□□□□□ -1.06
UBR1-208ENST00000569066 ZNF385CQ66K41 422 aaPredicted RBP8.43□□□□□ -1.06
UBR1-208ENST00000569066 VHLLQ6RSH7 139 aa8.43□□□□□ -1.06
UBR1-208ENST00000569066 SVOPQ8N4V2 548 aa8.43□□□□□ -1.06
UBR1-208ENST00000569066 NEDD1Q8NHV4 660 aa8.43□□□□□ -1.06
UBR1-208ENST00000569066 LRRC4BQ9NT99 713 aa8.43□□□□□ -1.06
UBR1-208ENST00000569066 FAM13CQ8NE31 585 aa8.43□□□□□ -1.06
UBR1-208ENST00000569066 ADH5P11766 374 aa8.42□□□□□ -1.06
UBR1-208ENST00000569066 HSD3B2P26439 372 aa8.42□□□□□ -1.06
UBR1-208ENST00000569066 IFRD2Q12894 506 aaPredicted RBP8.42□□□□□ -1.06
UBR1-208ENST00000569066 LRP10Q7Z4F1 713 aa8.42□□□□□ -1.06
UBR1-208ENST00000569066 FBXO11Q86XK2 927 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms