RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 STK32BQ9NY57 414 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 GDF2Q9UK05 429 aaPredicted RBP7.86□□□□□ -1.15
VPS39-209ENST00000568029 WWC3Q9ULE0 1092 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 SPG7Q9UQ90 795 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 RGPD5Q99666 1765 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 QSER1Q2KHR3 1735 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 ERBB4Q15303 1308 aa7.85□□□□□ -1.15
VPS39-209ENST00000568029 COL18A1P39060 1754 aa7.85□□□□□ -1.15
VPS39-209ENST00000568029 UNCXA6NJT0 531 aa7.85□□□□□ -1.15
VPS39-209ENST00000568029 E9PSI1 815 aa7.85□□□□□ -1.15
VPS39-209ENST00000568029 CYP2E1P05181 493 aaPredicted RBP7.85□□□□□ -1.15
VPS39-209ENST00000568029 TAGLNQ01995 201 aaKnown RBP7.85□□□□□ -1.15
VPS39-209ENST00000568029 MRPL58Q14197 206 aaKnown RBP7.85□□□□□ -1.15
VPS39-209ENST00000568029 USPL1Q5W0Q7 1092 aa7.85□□□□□ -1.15
VPS39-209ENST00000568029 MARCH10Q8NA82 808 aaPredicted RBP7.85□□□□□ -1.15
VPS39-209ENST00000568029 COL25A1Q9BXS0 654 aaPredicted RBP7.85□□□□□ -1.15
VPS39-209ENST00000568029 SRCIN1Q9C0H9 1055 aa7.85□□□□□ -1.15
VPS39-209ENST00000568029 PARP2Q9UGN5 583 aa7.85□□□□□ -1.15
VPS39-209ENST00000568029 ARHGEF28Q8N1W1 1705 aaKnown RBP7.85□□□□□ -1.15
VPS39-209ENST00000568029 HTRA3P83110 453 aa7.84□□□□□ -1.15
VPS39-209ENST00000568029 RAB44Q7Z6P3 723 aaPredicted RBP7.84□□□□□ -1.15
VPS39-209ENST00000568029 FAM9BQ8IZU0 186 aa7.84□□□□□ -1.15
VPS39-209ENST00000568029 GOLGA6L1Q8N7Z2 621 aa7.84□□□□□ -1.15
VPS39-209ENST00000568029 ZNF428Q96B54 188 aa7.84□□□□□ -1.15
VPS39-209ENST00000568029 MRRFQ96E11 262 aaKnown RBP7.84□□□□□ -1.15
VPS39-209ENST00000568029 LRRC4BQ9NT99 713 aa7.84□□□□□ -1.15
VPS39-209ENST00000568029 NLRP2Q9NX02 1062 aa7.84□□□□□ -1.15
VPS39-209ENST00000568029 KLF15Q9UIH9 416 aa7.84□□□□□ -1.15
VPS39-209ENST00000568029 TRPM1Q7Z4N2 1603 aa7.84□□□□□ -1.15
VPS39-209ENST00000568029 CRB1P82279 1406 aa7.84□□□□□ -1.15
VPS39-209ENST00000568029 WFS1O76024 890 aa7.83□□□□□ -1.16
VPS39-209ENST00000568029 EVA1CP58658 441 aa7.83□□□□□ -1.16
VPS39-209ENST00000568029 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.83□□□□□ -1.16
VPS39-209ENST00000568029 RNFT1Q5M7Z0 435 aa7.83□□□□□ -1.16
VPS39-209ENST00000568029 SLCO4C1Q6ZQN7 724 aa7.83□□□□□ -1.16
VPS39-209ENST00000568029 CEP120Q8N960 986 aa7.83□□□□□ -1.16
VPS39-209ENST00000568029 SETDB2Q96T68 719 aa7.83□□□□□ -1.16
VPS39-209ENST00000568029 SUV39H2Q9H5I1 410 aa7.83□□□□□ -1.16
VPS39-209ENST00000568029 DNAJB12Q9NXW2 375 aaKnown RBP7.83□□□□□ -1.16
VPS39-209ENST00000568029 KIAA1522Q9P206 1035 aaPredicted RBP7.83□□□□□ -1.16
VPS39-209ENST00000568029 SUPT16HQ9Y5B9 1047 aaKnown RBP7.83□□□□□ -1.16
VPS39-209ENST00000568029 EIF3AQ14152 1382 aaKnown RBP7.83□□□□□ -1.16
VPS39-209ENST00000568029 LOC102724428A0A0B4J2F2 783 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 ZBTB42B2RXF5 422 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 SLURP2P0DP57 97 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 SIK1P57059 783 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 PCBP4P57723 403 aaKnown RBP7.82□□□□□ -1.16
VPS39-209ENST00000568029 PSMD2Q13200 908 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 PEAR1Q5VY43 1037 aaPredicted RBP7.82□□□□□ -1.16
VPS39-209ENST00000568029 DNAJC5GQ8N7S2 189 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 EPS8L3Q8TE67 593 aaKnown RBP7.82□□□□□ -1.16
VPS39-209ENST00000568029 SPACA7Q96KW9 195 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 TESK2Q96S53 571 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 OXCT2Q9BYC2 517 aaPredicted RBP7.82□□□□□ -1.16
VPS39-209ENST00000568029 UBE2OQ9C0C9 1292 aaKnown RBP7.82□□□□□ -1.16
VPS39-209ENST00000568029 NPHS2Q9NP85 383 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 TRAK1Q9UPV9 953 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 AK5Q9Y6K8 562 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 CPDO75976 1380 aa7.82□□□□□ -1.16
VPS39-209ENST00000568029 USP19O94966 1318 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 MYBBP1AQ9BQG0 1328 aaKnown RBP7.81□□□□□ -1.16
VPS39-209ENST00000568029 ELOA3CA0A087WX78 387 aaPredicted RBP7.81□□□□□ -1.16
VPS39-209ENST00000568029 A0A1W2PP55 124 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 ELOA3DA6NLF2 546 aaPredicted RBP7.81□□□□□ -1.16
VPS39-209ENST00000568029 SORBS3O60504 671 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 KRT76Q01546 638 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 DDB1Q16531 1140 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 ELOA3BQ3SY89 546 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 CCDC184Q52MB2 194 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 PRPF40BQ6NWY9 871 aaKnown RBP7.81□□□□□ -1.16
VPS39-209ENST00000568029 FCHSD1Q86WN1 690 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 NCAPG2Q86XI2 1143 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 NGDNQ8NEJ9 315 aaKnown RBP7.81□□□□□ -1.16
VPS39-209ENST00000568029 ELOA3Q8NG57 546 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 FRRS1LQ9P0K9 344 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 KANSL3Q9P2N6 904 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 SLC6A14Q9UN76 642 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 PIK3C2AO00443 1686 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 BRD4O60885 1362 aaPredicted RBP7.81□□□□□ -1.16
VPS39-209ENST00000568029 AATKQ6ZMQ8 1374 aa7.81□□□□□ -1.16
VPS39-209ENST00000568029 ZBED9Q6R2W3 1325 aa7.8□□□□□ -1.16
VPS39-209ENST00000568029 SLIT3O75094 1523 aa7.8□□□□□ -1.16
VPS39-209ENST00000568029 POLR3DP05423 398 aaPredicted RBP7.8□□□□□ -1.16
VPS39-209ENST00000568029 ADH7P40394 386 aa7.8□□□□□ -1.16
VPS39-209ENST00000568029 CNGB1Q14028 1251 aaPredicted RBP7.8□□□□□ -1.16
VPS39-209ENST00000568029 TTC9Q92623 222 aa7.8□□□□□ -1.16
VPS39-209ENST00000568029 ACSBG1Q96GR2 724 aa7.8□□□□□ -1.16
VPS39-209ENST00000568029 RBSNQ9H1K0 784 aa7.8□□□□□ -1.16
VPS39-209ENST00000568029 C12orf49Q9H741 205 aa7.8□□□□□ -1.16
VPS39-209ENST00000568029 DZANK1Q9NVP4 752 aa7.8□□□□□ -1.16
VPS39-209ENST00000568029 GGA1Q9UJY5 639 aa7.8□□□□□ -1.16
VPS39-209ENST00000568029 QRICH2Q9H0J4 1663 aa7.79□□□□□ -1.16
VPS39-209ENST00000568029 PNPLA7Q6ZV29 1317 aa7.79□□□□□ -1.16
VPS39-209ENST00000568029 BCL9O00512 1426 aa7.79□□□□□ -1.16
VPS39-209ENST00000568029 NEURL1BA8MQ27 555 aa7.79□□□□□ -1.16
VPS39-209ENST00000568029 EIF4BP23588 611 aaKnown RBP7.79□□□□□ -1.16
VPS39-209ENST00000568029 IRS1P35568 1242 aa7.79□□□□□ -1.16
VPS39-209ENST00000568029 TMEM102Q8N9M5 508 aaPredicted RBP7.79□□□□□ -1.16
VPS39-209ENST00000568029 PNISRQ8TF01 805 aaKnown RBP7.79□□□□□ -1.16
VPS39-209ENST00000568029 ANKRD24Q8TF21 1146 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms