RNA–Protein interactions for RNA: ENST00000566723.1

SMPD3-208, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-208ENST00000566723 AATFQ9NY61 560 aaKnown RBP eCLIP18.61■□□□□ 0.57
SMPD3-208ENST00000566723 SLC45A1Q9Y2W3 748 aa18.61■□□□□ 0.57
SMPD3-208ENST00000566723 DOCK3Q8IZD9 2030 aa18.61■□□□□ 0.57
SMPD3-208ENST00000566723 TRIM75PA6NK02 468 aa18.6■□□□□ 0.57
SMPD3-208ENST00000566723 CYP2C8P10632 490 aa18.6■□□□□ 0.57
SMPD3-208ENST00000566723 BCRP11274 1271 aa18.6■□□□□ 0.57
SMPD3-208ENST00000566723 ZAP70P43403 619 aa18.6■□□□□ 0.57
SMPD3-208ENST00000566723 PSMC4P43686 418 aa18.6■□□□□ 0.57
SMPD3-208ENST00000566723 TRIM47Q96LD4 638 aa18.6■□□□□ 0.57
SMPD3-208ENST00000566723 TMEM106CQ9BVX2 250 aa18.6■□□□□ 0.57
SMPD3-208ENST00000566723 ECM2O94769 699 aaPredicted RBP18.59■□□□□ 0.57
SMPD3-208ENST00000566723 PPP4CP60510 307 aa18.59■□□□□ 0.57
SMPD3-208ENST00000566723 ADGRA1Q86SQ6 560 aa18.59■□□□□ 0.57
SMPD3-208ENST00000566723 CCDC84Q86UT8 332 aaPredicted RBP18.59■□□□□ 0.57
SMPD3-208ENST00000566723 ERC1Q8IUD2 1116 aa18.59■□□□□ 0.57
SMPD3-208ENST00000566723 EAF2Q96CJ1 260 aaPredicted RBP18.59■□□□□ 0.57
SMPD3-208ENST00000566723 CCDC8Q9H0W5 538 aaPredicted RBP18.59■□□□□ 0.57
SMPD3-208ENST00000566723 PIH1D3Q9NQM4 214 aaKnown RBP18.59■□□□□ 0.57
SMPD3-208ENST00000566723 SRRDQ9UH36 339 aa18.59■□□□□ 0.57
SMPD3-208ENST00000566723 HERC5Q9UII4 1024 aaKnown RBP18.59■□□□□ 0.57
SMPD3-208ENST00000566723 FLT1P17948 1338 aa18.58■□□□□ 0.57
SMPD3-208ENST00000566723 SLC34A2O95436 690 aa18.58■□□□□ 0.56
SMPD3-208ENST00000566723 FMNL1O95466 1100 aaPredicted RBP18.58■□□□□ 0.56
SMPD3-208ENST00000566723 MS4A1P11836 297 aa18.58■□□□□ 0.56
SMPD3-208ENST00000566723 EN2P19622 333 aaPredicted RBP18.58■□□□□ 0.56
SMPD3-208ENST00000566723 OSBPP22059 807 aa18.58■□□□□ 0.56
SMPD3-208ENST00000566723 SH3TC2Q8TF17 1288 aa18.58■□□□□ 0.56
SMPD3-208ENST00000566723 TBC1D2Q9BYX2 928 aa18.58■□□□□ 0.56
SMPD3-208ENST00000566723 DHX36Q9H2U1 1008 aaKnown RBP18.58■□□□□ 0.56
SMPD3-208ENST00000566723 EXOC6BQ9Y2D4 811 aa18.58■□□□□ 0.56
SMPD3-208ENST00000566723 MYPNQ86TC9 1320 aa18.57■□□□□ 0.56
SMPD3-208ENST00000566723 HOXD10P28358 340 aa18.57■□□□□ 0.56
SMPD3-208ENST00000566723 CAP2P40123 477 aa18.57■□□□□ 0.56
SMPD3-208ENST00000566723 MAPKAPK5Q8IW41 473 aa18.57■□□□□ 0.56
SMPD3-208ENST00000566723 PI4KBQ9UBF8 816 aa18.57■□□□□ 0.56
SMPD3-208ENST00000566723 AGTPBP1Q9UPW5 1226 aa18.57■□□□□ 0.56
SMPD3-208ENST00000566723 FCGRTP55899 365 aa18.56■□□□□ 0.56
SMPD3-208ENST00000566723 RRP1BQ14684 758 aaKnown RBP18.56■□□□□ 0.56
SMPD3-208ENST00000566723 SLC4A8Q2Y0W8 1093 aa18.56■□□□□ 0.56
SMPD3-208ENST00000566723 AACSQ86V21 672 aa18.56■□□□□ 0.56
SMPD3-208ENST00000566723 PROCA1Q8NCQ7 364 aaPredicted RBP18.56■□□□□ 0.56
SMPD3-208ENST00000566723 SMCR8Q8TEV9 937 aaPredicted RBP18.56■□□□□ 0.56
SMPD3-208ENST00000566723 TGFBRAP1Q8WUH2 860 aa18.56■□□□□ 0.56
SMPD3-208ENST00000566723 NAV1Q8NEY1 1877 aa18.56■□□□□ 0.56
SMPD3-208ENST00000566723 DDX60LQ5H9U9 1706 aaKnown RBP18.55■□□□□ 0.56
SMPD3-208ENST00000566723 IDH1O75874 414 aaKnown RBP18.55■□□□□ 0.56
SMPD3-208ENST00000566723 HSP90AB4PQ58FF6 505 aa18.55■□□□□ 0.56
SMPD3-208ENST00000566723 TREML2Q5T2D2 321 aa18.55■□□□□ 0.56
SMPD3-208ENST00000566723 ZNF280CQ8ND82 737 aa18.55■□□□□ 0.56
SMPD3-208ENST00000566723 RAET1EQ8TD07 263 aa18.55■□□□□ 0.56
SMPD3-208ENST00000566723 USP17L5A8MUK1 530 aa18.54■□□□□ 0.56
SMPD3-208ENST00000566723 MYCP01106 439 aaPredicted RBP18.54■□□□□ 0.56
SMPD3-208ENST00000566723 CYP7A1P22680 504 aa18.54■□□□□ 0.56
SMPD3-208ENST00000566723 SPP2Q13103 211 aa18.54■□□□□ 0.56
SMPD3-208ENST00000566723 DNAJC18Q9H819 358 aa18.54■□□□□ 0.56
SMPD3-208ENST00000566723 PNMA3Q9UL41 463 aa18.54■□□□□ 0.56
SMPD3-208ENST00000566723 DDX19BQ9UMR2 479 aa18.54■□□□□ 0.56
SMPD3-208ENST00000566723 NDUFB9Q9Y6M9 179 aa18.54■□□□□ 0.56
SMPD3-208ENST00000566723 GRK4P32298 578 aa18.53■□□□□ 0.56
SMPD3-208ENST00000566723 HMGCS2P54868 508 aa18.53■□□□□ 0.56
SMPD3-208ENST00000566723 DYNLL1P63167 89 aaKnown RBP18.53■□□□□ 0.56
SMPD3-208ENST00000566723 PRKCZQ05513 592 aa18.53■□□□□ 0.56
SMPD3-208ENST00000566723 METTL16Q86W50 562 aaKnown RBP18.53■□□□□ 0.56
SMPD3-208ENST00000566723 CERS3Q8IU89 383 aa18.53■□□□□ 0.56
SMPD3-208ENST00000566723 AS3MTQ9HBK9 375 aa18.53■□□□□ 0.56
SMPD3-208ENST00000566723 MYH7P12883 1935 aa18.53■□□□□ 0.56
SMPD3-208ENST00000566723 HLA-DOAP06340 250 aa18.52■□□□□ 0.56
SMPD3-208ENST00000566723 ASNSP08243 561 aa18.52■□□□□ 0.56
SMPD3-208ENST00000566723 TMED8Q6PL24 325 aaPredicted RBP18.52■□□□□ 0.56
SMPD3-208ENST00000566723 CRACR2BQ8N4Y2 399 aaPredicted RBP18.52■□□□□ 0.56
SMPD3-208ENST00000566723 MAGEB6Q8N7X4 407 aa18.52■□□□□ 0.56
SMPD3-208ENST00000566723 MIGA1Q8NAN2 632 aa18.52■□□□□ 0.56
SMPD3-208ENST00000566723 RHPN1Q8TCX5 695 aa18.52■□□□□ 0.56
SMPD3-208ENST00000566723 TRIM34Q9BYJ4 488 aa18.52■□□□□ 0.56
SMPD3-208ENST00000566723 IL1RAPL2Q9NP60 686 aa18.52■□□□□ 0.56
SMPD3-208ENST00000566723 PALD1Q9ULE6 856 aa18.52■□□□□ 0.56
SMPD3-208ENST00000566723 HMMRO75330 724 aa18.51■□□□□ 0.55
SMPD3-208ENST00000566723 MAP3K12Q12852 859 aa18.51■□□□□ 0.55
SMPD3-208ENST00000566723 PABPC4Q13310 644 aaKnown RBP eCLIP18.51■□□□□ 0.55
SMPD3-208ENST00000566723 FAM110CQ1W6H9 321 aa18.51■□□□□ 0.55
SMPD3-208ENST00000566723 SH3D19Q5HYK7 790 aa18.51■□□□□ 0.55
SMPD3-208ENST00000566723 FOXP4Q8IVH2 680 aaPredicted RBP18.51■□□□□ 0.55
SMPD3-208ENST00000566723 RPAP2Q8IXW5 612 aaPredicted RBP18.51■□□□□ 0.55
SMPD3-208ENST00000566723 WDR18Q9BV38 432 aa18.51■□□□□ 0.55
SMPD3-208ENST00000566723 ANTXR1Q9H6X2 564 aa18.51■□□□□ 0.55
SMPD3-208ENST00000566723 SAP30BPQ9UHR5 308 aaKnown RBP18.51■□□□□ 0.55
SMPD3-208ENST00000566723 COG6Q9Y2V7 657 aa18.51■□□□□ 0.55
SMPD3-208ENST00000566723 CEP290O15078 2479 aa18.51■□□□□ 0.55
SMPD3-208ENST00000566723 MTFR1Q15390 333 aa18.5■□□□□ 0.55
SMPD3-208ENST00000566723 ANKRD13CQ8N6S4 541 aa18.5■□□□□ 0.55
SMPD3-208ENST00000566723 SLAIN1Q8ND83 568 aa18.5■□□□□ 0.55
SMPD3-208ENST00000566723 KIF1BPQ96EK5 621 aa18.5■□□□□ 0.55
SMPD3-208ENST00000566723 GINM1Q9NU53 330 aa18.5■□□□□ 0.55
SMPD3-208ENST00000566723 ZBTB40Q9NUA8 1239 aa18.5■□□□□ 0.55
SMPD3-208ENST00000566723 RCAN3Q9UKA8 241 aa18.5■□□□□ 0.55
SMPD3-208ENST00000566723 GABRQQ9UN88 632 aa18.5■□□□□ 0.55
SMPD3-208ENST00000566723 MYH8P13535 1937 aa18.5■□□□□ 0.55
SMPD3-208ENST00000566723 TNPO2O14787 897 aaKnown RBP18.49■□□□□ 0.55
SMPD3-208ENST00000566723 USP5P45974 858 aa18.49■□□□□ 0.55
SMPD3-208ENST00000566723 MTMR2Q13614 643 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms