RNA–Protein interactions for RNA: ENST00000565452.1

VPS9D1-205, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 178 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-205ENST00000565452 PDE8BO95263 885 aa11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 IFIT1P09914 478 aaKnown RBP11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 TWISTNBQ3B726 338 aaPredicted RBP11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 SLC39A5Q6ZMH5 540 aa11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 ARRDC4Q8NCT1 418 aa11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 LPAR1Q92633 364 aa11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 GAS2L1Q99501 681 aaPredicted RBP11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 IDI2Q9BXS1 227 aa11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 PRDM5Q9NQX1 630 aaPredicted RBP11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 THEGQ9P2T0 379 aa11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 MGAMO43451 1857 aa11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 GRM8O00222 908 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 APAF1O14727 1248 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 LDHBP07195 334 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 CNGA1P29973 690 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 RGS3P49796 1198 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 HMGCS2P54868 508 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 IRX3P78415 501 aaPredicted RBP11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 DIXDC1Q155Q3 683 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 AKNAD1Q5T1N1 836 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 BEND3Q5T5X7 828 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 USP6NLQ92738 828 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 EDC3Q96F86 508 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 RNPC3Q96LT9 517 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 P2RX7Q99572 595 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 ZNF576Q9H609 170 aa11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 CWC22Q9HCG8 908 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 DDX20Q9UHI6 824 aaKnown RBP11.36□□□□□ -0.59
VPS9D1-205ENST00000565452 USP17L5A8MUK1 530 aa11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 TBC1D12O60347 775 aa11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 GLRX3O76003 335 aaKnown RBP11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 CCL14Q16627 93 aa11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 PLEKHH3Q7Z736 793 aa11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 CCDC84Q86UT8 332 aaPredicted RBP11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 OSBPL5Q9H0X9 879 aaPredicted RBP11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 TSPYL2Q9H2G4 693 aaPredicted RBP11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 DOCK3Q8IZD9 2030 aa11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 DDX60LQ5H9U9 1706 aaKnown RBP11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 KIF16BQ96L93 1317 aa11.35□□□□□ -0.59
VPS9D1-205ENST00000565452 ATRNL1Q5VV63 1379 aa11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 DDTLA6NHG4 134 aaPredicted RBP11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 HOXA7P31268 230 aaPredicted RBP11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 ATP2B2Q01814 1243 aa11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 LRRC24Q50LG9 513 aa11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 SH3D19Q5HYK7 790 aa11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 MORN1Q5T089 497 aa11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 SH3BP5LQ7L8J4 393 aa11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 APBA2Q99767 749 aa11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 AS3MTQ9HBK9 375 aa11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 GNL3LQ9NVN8 582 aaKnown RBP11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 TMOD4Q9NZQ9 345 aa11.34□□□□□ -0.59
VPS9D1-205ENST00000565452 KBTBD13C9JR72 458 aa11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 DNAJB2P25686 324 aa11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 MAP2K5Q13163 448 aa11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 PUM3Q15397 648 aaKnown RBP11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 GPR142Q7Z601 462 aa11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 SLF2Q8IX21 1173 aa11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 GTF3C2Q8WUA4 911 aaPredicted RBP11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 TSR2Q969E8 191 aaKnown RBP11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 TIFAQ96CG3 184 aa11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 RBPJLQ9UBG7 517 aa11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 TACC3Q9Y6A5 838 aa11.33□□□□□ -0.6
VPS9D1-205ENST00000565452 TRIM43BA6NCK2 446 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 F6X3S4 739 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 PRDX5P30044 214 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 HERVK_113P62684 666 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 ERVK-9P63128 1117 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 ERVK-24P63145 666 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 Q3C1V9 767 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 GJC2Q5T442 439 aaPredicted RBP11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 TRIM43Q96BQ3 446 aaPredicted RBP11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 LRFN3Q9BTN0 628 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 TXNRD2Q9NNW7 524 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 NCOR1O75376 2440 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 UTYO14607 1347 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 MYBBP1AQ9BQG0 1328 aaKnown RBP11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 DNAH12Q6ZR08 3092 aa11.32□□□□□ -0.6
VPS9D1-205ENST00000565452 C19orf81C9J6K1 198 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 ALDH1L1O75891 902 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 SLC5A1P13866 664 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 FGFR2P21802 821 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 CAP2P40123 477 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 BACE1P56817 501 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 PICALMQ13492 652 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 CCDC85BQ15834 202 aaPredicted RBP11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 AAK1Q2M2I8 961 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 TRIM60Q495X7 471 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 C1orf53Q5VUE5 145 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 POTEEQ6S8J3 1075 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 VGLL2Q8N8G2 317 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 LPIN2Q92539 896 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 WDR18Q9BV38 432 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 PDLIM7Q9NR12 457 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 BDP1A6H8Y1 2624 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 PIEZO1Q92508 2521 aa11.31□□□□□ -0.6
VPS9D1-205ENST00000565452 PEX10O60683 326 aa11.3□□□□□ -0.6
VPS9D1-205ENST00000565452 SLURP2P0DP57 97 aa11.3□□□□□ -0.6
VPS9D1-205ENST00000565452 RAG1P15918 1043 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms