RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 TTF1Q15361 905 aaPredicted RBP22.36■■□□□ 1.17
CLN3-214ENST00000565140 PI4KBQ9UBF8 816 aa22.36■■□□□ 1.17
CLN3-214ENST00000565140 PALD1Q9ULE6 856 aa22.36■■□□□ 1.17
CLN3-214ENST00000565140 AFG3L2Q9Y4W6 797 aa22.36■■□□□ 1.17
CLN3-214ENST00000565140 HTTP42858 3142 aa22.35■■□□□ 1.17
CLN3-214ENST00000565140 CXCL11O14625 94 aa22.35■■□□□ 1.17
CLN3-214ENST00000565140 ATP5JP18859 108 aa22.35■■□□□ 1.17
CLN3-214ENST00000565140 PKN2Q16513 984 aaKnown RBP22.35■■□□□ 1.17
CLN3-214ENST00000565140 CCDC84Q86UT8 332 aaPredicted RBP22.35■■□□□ 1.17
CLN3-214ENST00000565140 CD99L2Q8TCZ2 262 aa22.35■■□□□ 1.17
CLN3-214ENST00000565140 DHX36Q9H2U1 1008 aaKnown RBP22.35■■□□□ 1.17
CLN3-214ENST00000565140 BOLA2Q9H3K6 86 aa22.35■■□□□ 1.17
CLN3-214ENST00000565140 ZCCHC17Q9NP64 241 aaKnown RBP22.35■■□□□ 1.17
CLN3-214ENST00000565140 SAP30BPQ9UHR5 308 aaKnown RBP22.35■■□□□ 1.17
CLN3-214ENST00000565140 SP3Q02447 781 aa22.34■■□□□ 1.17
CLN3-214ENST00000565140 SLC9C2Q5TAH2 1124 aa22.34■■□□□ 1.17
CLN3-214ENST00000565140 HPS5Q9UPZ3 1129 aa22.34■■□□□ 1.17
CLN3-214ENST00000565140 ZSWIM8A7E2V4 1837 aa22.34■■□□□ 1.17
CLN3-214ENST00000565140 PDE6AP16499 860 aa22.33■■□□□ 1.17
CLN3-214ENST00000565140 TMED8Q6PL24 325 aaPredicted RBP22.33■■□□□ 1.17
CLN3-214ENST00000565140 OTOP1Q7RTM1 612 aa22.33■■□□□ 1.17
CLN3-214ENST00000565140 ANKRD23Q86SG2 305 aa22.33■■□□□ 1.17
CLN3-214ENST00000565140 ERO1AQ96HE7 468 aa22.33■■□□□ 1.17
CLN3-214ENST00000565140 RIOK1Q9BRS2 568 aaKnown RBP22.33■■□□□ 1.17
CLN3-214ENST00000565140 HERC5Q9UII4 1024 aaKnown RBP22.33■■□□□ 1.17
CLN3-214ENST00000565140 PDHXO00330 501 aa22.32■■□□□ 1.16
CLN3-214ENST00000565140 TLR2O60603 784 aa22.32■■□□□ 1.16
CLN3-214ENST00000565140 CAP2P40123 477 aa22.32■■□□□ 1.16
CLN3-214ENST00000565140 SLC4A8Q2Y0W8 1093 aa22.32■■□□□ 1.16
CLN3-214ENST00000565140 GPAT2Q6NUI2 795 aa22.32■■□□□ 1.16
CLN3-214ENST00000565140 CRBNQ96SW2 442 aa22.32■■□□□ 1.16
CLN3-214ENST00000565140 DNAJC18Q9H819 358 aa22.32■■□□□ 1.16
CLN3-214ENST00000565140 PAG1Q9NWQ8 432 aa22.32■■□□□ 1.16
CLN3-214ENST00000565140 TRIM17Q9Y577 477 aa22.32■■□□□ 1.16
CLN3-214ENST00000565140 A0A0G2JLL6 359 aaPredicted RBP22.31■■□□□ 1.16
CLN3-214ENST00000565140 TCRBV5S4A2TA0A5A2 114 aa22.31■■□□□ 1.16
CLN3-214ENST00000565140 FBXO46Q6PJ61 603 aaPredicted RBP22.31■■□□□ 1.16
CLN3-214ENST00000565140 PRRT2Q7Z6L0 340 aaPredicted RBP22.31■■□□□ 1.16
CLN3-214ENST00000565140 METTL16Q86W50 562 aaKnown RBP22.31■■□□□ 1.16
CLN3-214ENST00000565140 FOXP4Q8IVH2 680 aaPredicted RBP22.31■■□□□ 1.16
CLN3-214ENST00000565140 HAUS7Q99871 368 aa22.31■■□□□ 1.16
CLN3-214ENST00000565140 CENPFP49454 3210 aa22.31■■□□□ 1.16
CLN3-214ENST00000565140 ZNF532Q9HCE3 1301 aa22.31■■□□□ 1.16
CLN3-214ENST00000565140 MAGEB6P1A0A0J9YX57 407 aa22.3■■□□□ 1.16
CLN3-214ENST00000565140 TRIM75PA6NK02 468 aa22.3■■□□□ 1.16
CLN3-214ENST00000565140 USP5P45974 858 aa22.3■■□□□ 1.16
CLN3-214ENST00000565140 JAG1P78504 1218 aa22.3■■□□□ 1.16
CLN3-214ENST00000565140 SLFNL1Q499Z3 407 aa22.3■■□□□ 1.16
CLN3-214ENST00000565140 CERS3Q8IU89 383 aa22.3■■□□□ 1.16
CLN3-214ENST00000565140 NAV1Q8NEY1 1877 aa22.3■■□□□ 1.16
CLN3-214ENST00000565140 DDX60LQ5H9U9 1706 aaKnown RBP22.28■■□□□ 1.16
CLN3-214ENST00000565140 CHGBP05060 677 aa22.28■■□□□ 1.16
CLN3-214ENST00000565140 SHROOM1Q2M3G4 852 aaPredicted RBP22.28■■□□□ 1.16
CLN3-214ENST00000565140 C17orf99Q6UX52 265 aa22.28■■□□□ 1.16
CLN3-214ENST00000565140 GADL1Q6ZQY3 521 aa22.28■■□□□ 1.16
CLN3-214ENST00000565140 FASTKD5Q7L8L6 764 aaKnown RBP22.28■■□□□ 1.16
CLN3-214ENST00000565140 CRACR2BQ8N4Y2 399 aaPredicted RBP22.28■■□□□ 1.16
CLN3-214ENST00000565140 EFCC1Q9HA90 598 aa22.28■■□□□ 1.16
CLN3-214ENST00000565140 ADGRA2Q96PE1 1338 aa22.28■■□□□ 1.16
CLN3-214ENST00000565140 BAZ2AQ9UIF9 1905 aaKnown RBP22.27■■□□□ 1.16
CLN3-214ENST00000565140 SPP2Q13103 211 aa22.27■■□□□ 1.16
CLN3-214ENST00000565140 CPA4Q9UI42 421 aa22.27■■□□□ 1.16
CLN3-214ENST00000565140 LOC285556D6RIA3 1793 aa22.27■■□□□ 1.16
CLN3-214ENST00000565140 USP17L5A8MUK1 530 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 HLA-DOAP06340 250 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 CYP2C8P10632 490 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 ADD2P35612 726 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 RGS19P49795 217 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 LCORLQ8N3X6 602 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 ZNF280CQ8ND82 737 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 ARHGAP39Q9C0H5 1083 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 ECHDC1Q9NTX5 307 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 PTPN22Q9Y2R2 807 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 MGAMO43451 1857 aa22.26■■□□□ 1.15
CLN3-214ENST00000565140 TNRC18O15417 2968 aaPredicted RBP22.25■■□□□ 1.15
CLN3-214ENST00000565140 LACTBP83111 547 aaPredicted RBP22.25■■□□□ 1.15
CLN3-214ENST00000565140 TSHZ3Q63HK5 1081 aa22.25■■□□□ 1.15
CLN3-214ENST00000565140 TRIM34Q9BYJ4 488 aa22.25■■□□□ 1.15
CLN3-214ENST00000565140 GDF11O95390 407 aa22.24■■□□□ 1.15
CLN3-214ENST00000565140 PLCD1P51178 756 aa22.24■■□□□ 1.15
CLN3-214ENST00000565140 SOX10P56693 466 aa22.24■■□□□ 1.15
CLN3-214ENST00000565140 TREML2Q5T2D2 321 aa22.24■■□□□ 1.15
CLN3-214ENST00000565140 CRNKL1Q9BZJ0 848 aaKnown RBP22.24■■□□□ 1.15
CLN3-214ENST00000565140 ARMT1Q9H993 441 aa22.24■■□□□ 1.15
CLN3-214ENST00000565140 ECM2O94769 699 aaPredicted RBP22.23■■□□□ 1.15
CLN3-214ENST00000565140 ASNSP08243 561 aa22.23■■□□□ 1.15
CLN3-214ENST00000565140 CTGFP29279 349 aa22.23■■□□□ 1.15
CLN3-214ENST00000565140 EVX2Q03828 476 aa22.23■■□□□ 1.15
CLN3-214ENST00000565140 SDR42E1Q8WUS8 393 aa22.23■■□□□ 1.15
CLN3-214ENST00000565140 PARK7Q99497 189 aaKnown RBP22.23■■□□□ 1.15
CLN3-214ENST00000565140 TBC1D2Q9BYX2 928 aa22.23■■□□□ 1.15
CLN3-214ENST00000565140 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.23■■□□□ 1.152e-6■■■■■ 40.7
CLN3-214ENST00000565140 HMGCS2P54868 508 aa22.22■■□□□ 1.15
CLN3-214ENST00000565140 TATDN1Q6P1N9 297 aa22.22■■□□□ 1.15
CLN3-214ENST00000565140 TTC6Q86TZ1 520 aa22.22■■□□□ 1.15
CLN3-214ENST00000565140 OTUD7AQ8TE49 926 aaPredicted RBP22.22■■□□□ 1.15
CLN3-214ENST00000565140 WDR18Q9BV38 432 aa22.22■■□□□ 1.15
CLN3-214ENST00000565140 EHD4Q9H223 541 aa22.22■■□□□ 1.15
CLN3-214ENST00000565140 SERPINB13Q9UIV8 391 aa22.22■■□□□ 1.15
CLN3-214ENST00000565140 AGTPBP1Q9UPW5 1226 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms