RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 CCDC136Q96JN2 1154 aa20.11■□□□□ 0.81
CLK3-207ENST00000562389 STRBPQ96SI9 672 aaKnown RBP20.11■□□□□ 0.81
CLK3-207ENST00000562389 ZIC5Q96T25 663 aa20.11■□□□□ 0.81
CLK3-207ENST00000562389 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLK3-207ENST00000562389 ATP8A2Q9NTI2 1148 aa20.11■□□□□ 0.81
CLK3-207ENST00000562389 M0R2C6 588 aa20.1■□□□□ 0.81
CLK3-207ENST00000562389 GPAA1O43292 621 aa20.1■□□□□ 0.81
CLK3-207ENST00000562389 PRKAB2O43741 272 aa20.1■□□□□ 0.81
CLK3-207ENST00000562389 SLURP2P0DP57 97 aa20.1■□□□□ 0.81
CLK3-207ENST00000562389 KIF23Q02241 960 aaPredicted RBP20.1■□□□□ 0.81
CLK3-207ENST00000562389 FOXP4Q8IVH2 680 aaPredicted RBP20.1■□□□□ 0.81
CLK3-207ENST00000562389 REM2Q8IYK8 340 aaPredicted RBP20.1■□□□□ 0.81
CLK3-207ENST00000562389 RILPL2Q969X0 211 aa20.1■□□□□ 0.81
CLK3-207ENST00000562389 OPTNQ96CV9 577 aa20.1■□□□□ 0.81
CLK3-207ENST00000562389 EHD4Q9H223 541 aa20.1■□□□□ 0.81
CLK3-207ENST00000562389 SLC4A4Q9Y6R1 1079 aa20.1■□□□□ 0.81
CLK3-207ENST00000562389 SPDYE5A6NIY4 337 aa20.09■□□□□ 0.81
CLK3-207ENST00000562389 TTC22Q5TAA0 569 aa20.09■□□□□ 0.81
CLK3-207ENST00000562389 TTC6Q86TZ1 520 aa20.09■□□□□ 0.81
CLK3-207ENST00000562389 ERO1BQ86YB8 467 aa20.09■□□□□ 0.81
CLK3-207ENST00000562389 DNAJC18Q9H819 358 aa20.09■□□□□ 0.81
CLK3-207ENST00000562389 MCM9Q9NXL9 1143 aa20.09■□□□□ 0.81
CLK3-207ENST00000562389 FAM196BA6NMK8 535 aa20.08■□□□□ 0.81
CLK3-207ENST00000562389 CTNND1O60716 968 aaKnown RBP20.08■□□□□ 0.81
CLK3-207ENST00000562389 GNAT2P19087 354 aa20.08■□□□□ 0.81
CLK3-207ENST00000562389 GJA5P36382 358 aa20.08■□□□□ 0.81
CLK3-207ENST00000562389 SCYL3Q8IZE3 742 aa20.08■□□□□ 0.81
CLK3-207ENST00000562389 CRACR2BQ8N4Y2 399 aaPredicted RBP20.08■□□□□ 0.81
CLK3-207ENST00000562389 SEC62Q99442 399 aaKnown RBP20.08■□□□□ 0.81
CLK3-207ENST00000562389 WBP1LQ9NX94 342 aa20.08■□□□□ 0.81
CLK3-207ENST00000562389 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.08■□□□□ 0.81
CLK3-207ENST00000562389 PHIPQ8WWQ0 1821 aa20.07■□□□□ 0.8
CLK3-207ENST00000562389 POLR3DP05423 398 aaPredicted RBP20.07■□□□□ 0.8
CLK3-207ENST00000562389 GSPT1P15170 499 aaKnown RBP20.07■□□□□ 0.8
CLK3-207ENST00000562389 MKRN3Q13064 507 aaKnown RBP20.07■□□□□ 0.8
CLK3-207ENST00000562389 SLC4A8Q2Y0W8 1093 aa20.07■□□□□ 0.8
CLK3-207ENST00000562389 GIMAP6Q6P9H5 292 aa20.07■□□□□ 0.8
CLK3-207ENST00000562389 DDRGK1Q96HY6 314 aa20.07■□□□□ 0.8
CLK3-207ENST00000562389 TRIM34Q9BYJ4 488 aa20.07■□□□□ 0.8
CLK3-207ENST00000562389 HELLSQ9NRZ9 838 aa20.07■□□□□ 0.8
CLK3-207ENST00000562389 SERPINB13Q9UIV8 391 aa20.07■□□□□ 0.8
CLK3-207ENST00000562389 HSPA1AP0DMV8 641 aaKnown RBP20.06■□□□□ 0.8
CLK3-207ENST00000562389 HSPA1BP0DMV9 641 aaKnown RBP20.06■□□□□ 0.8
CLK3-207ENST00000562389 PLCD1P51178 756 aa20.06■□□□□ 0.8
CLK3-207ENST00000562389 PPATQ06203 517 aa20.06■□□□□ 0.8
CLK3-207ENST00000562389 CNKSR2Q8WXI2 1034 aa20.06■□□□□ 0.8
CLK3-207ENST00000562389 OTUD5Q96G74 571 aa20.06■□□□□ 0.8
CLK3-207ENST00000562389 MYH8P13535 1937 aa20.06■□□□□ 0.8
CLK3-207ENST00000562389 MANSC4A6NHS7 340 aaPredicted RBP20.05■□□□□ 0.8
CLK3-207ENST00000562389 GSG1L2A8MUP6 293 aa20.05■□□□□ 0.8
CLK3-207ENST00000562389 SDSP20132 328 aa20.05■□□□□ 0.8
CLK3-207ENST00000562389 GABPAQ06546 454 aa20.05■□□□□ 0.8
CLK3-207ENST00000562389 SREBF2Q12772 1141 aa20.05■□□□□ 0.8
CLK3-207ENST00000562389 PPIL2Q13356 520 aa20.05■□□□□ 0.8
CLK3-207ENST00000562389 PICK1Q9NRD5 415 aa20.05■□□□□ 0.8
CLK3-207ENST00000562389 TAOK2Q9UL54 1235 aa20.05■□□□□ 0.8
CLK3-207ENST00000562389 A0A0D9SFI3 127 aa20.04■□□□□ 0.8
CLK3-207ENST00000562389 CAP2P40123 477 aa20.04■□□□□ 0.8
CLK3-207ENST00000562389 TM4SF4P48230 202 aa20.04■□□□□ 0.8
CLK3-207ENST00000562389 RRP1BQ14684 758 aaKnown RBP20.04■□□□□ 0.8
CLK3-207ENST00000562389 AMOTL1Q8IY63 956 aa20.04■□□□□ 0.8
CLK3-207ENST00000562389 FAM227BQ96M60 508 aa20.04■□□□□ 0.8
CLK3-207ENST00000562389 PPP4R2Q9NY27 417 aa20.04■□□□□ 0.8
CLK3-207ENST00000562389 ARPP21Q9UBL0 812 aaPredicted RBP20.04■□□□□ 0.8
CLK3-207ENST00000562389 PATL2C9JE40 543 aaKnown RBP20.03■□□□□ 0.8
CLK3-207ENST00000562389 USP17L12C9JPN9 530 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 USP17L21D6R901 530 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 HIP1O00291 1037 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 PTPRAP18433 802 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 INHBEP58166 350 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 NMIQ13287 307 aaPredicted RBP20.03■□□□□ 0.8
CLK3-207ENST00000562389 MCMDC2Q4G0Z9 681 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 C12orf60Q5U649 245 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 TATDN1Q6P1N9 297 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 BEGAINQ9BUH8 593 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 EPB41L4AQ9HCS5 686 aaPredicted RBP20.03■□□□□ 0.8
CLK3-207ENST00000562389 GINM1Q9NU53 330 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 PTPRFP10586 1907 aa20.03■□□□□ 0.8
CLK3-207ENST00000562389 TESPA1A2RU30 521 aaPredicted RBP20.02■□□□□ 0.8
CLK3-207ENST00000562389 IRF6O14896 467 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 CA12O43570 354 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 CYP2D6P10635 497 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 GTF2A2P52657 109 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 EVX2Q03828 476 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 SBK1Q52WX2 424 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 CTR9Q6PD62 1173 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 CCDC129Q6ZRS4 1044 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 MS4A4AQ96JQ5 239 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 KCNH4Q9UQ05 1017 aa20.02■□□□□ 0.8
CLK3-207ENST00000562389 SHMT1P34896 483 aa20.01■□□□□ 0.79
CLK3-207ENST00000562389 IFNL3Q8IZI9 196 aa20.01■□□□□ 0.79
CLK3-207ENST00000562389 TBC1D2Q9BYX2 928 aa20.01■□□□□ 0.79
CLK3-207ENST00000562389 NACAP1Q9BZK3 213 aa20.01■□□□□ 0.79
CLK3-207ENST00000562389 DIAPH3Q9NSV4 1193 aa20.01■□□□□ 0.79
CLK3-207ENST00000562389 SAGE1Q9NXZ1 904 aa20.01■□□□□ 0.79
CLK3-207ENST00000562389 SWAP70Q9UH65 585 aa20.01■□□□□ 0.79
CLK3-207ENST00000562389 ROBO3Q96MS0 1386 aa20■□□□□ 0.79
CLK3-207ENST00000562389 CYP2D7A0A087X1C5 515 aa20■□□□□ 0.79
CLK3-207ENST00000562389 APPP05067 770 aa20■□□□□ 0.79
CLK3-207ENST00000562389 ASNSP08243 561 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms