RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 HS1BP3Q53T59 392 aa16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 TBC1D16Q8TBP0 767 aa16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 TNMDQ9H2S6 317 aa16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 USP5P45974 858 aa16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 GNL2Q13823 731 aaKnown RBP16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 CPLX2Q6PUV4 134 aaKnown RBP16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 CCAR1Q8IX12 1150 aaKnown RBP16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 SLC44A5Q8NCS7 719 aa16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 TGFBRAP1Q8WUH2 860 aa16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 MTMR7Q9Y216 660 aa16.38■□□□□ 0.21
CARMIL3-203ENST00000560349 SEC23AQ15436 765 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 MYSM1Q5VVJ2 828 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 MAPKAPK5Q8IW41 473 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 ZSCAN10Q96SZ4 725 aaPredicted RBP16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 MXD3Q9BW11 206 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 USP25Q9UHP3 1055 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 ANAPC4Q9UJX5 808 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 NOL7Q9UMY1 257 aaKnown RBP16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 OFD1O75665 1012 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 CDKL5O76039 1030 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 MARCKSP29966 332 aaPredicted RBP16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 SSRP1Q08945 709 aaKnown RBP16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 WDR66Q8TBY9 1149 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 ZNF396Q96N95 335 aaPredicted RBP16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 FUCA2Q9BTY2 467 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 RCOR1Q9UKL0 485 aa16.37■□□□□ 0.21
CARMIL3-203ENST00000560349 PPEF1O14829 653 aaPredicted RBP16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 PLEKHA8P1O95397 391 aa16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 MAP3K11Q16584 847 aa16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 MFSD14BQ5SR56 506 aa16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 IFIT1BQ5T764 474 aaKnown RBP16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 ZNF772Q68DY9 489 aaPredicted RBP16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 AKT1S1Q96B36 256 aa16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 PCDHA7Q9UN72 937 aa16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 DUOX1Q9NRD9 1551 aa16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 A0A1B0GVL5 298 aa16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 STK38Q15208 465 aa16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 FANCBQ8NB91 859 aa16.36■□□□□ 0.21
CARMIL3-203ENST00000560349 HSP90AA2PQ14568 343 aaPredicted RBP16.35■□□□□ 0.21
CARMIL3-203ENST00000560349 SF3A1Q15459 793 aaKnown RBP16.35■□□□□ 0.21
CARMIL3-203ENST00000560349 FSIP1Q8NA03 581 aa16.35■□□□□ 0.21
CARMIL3-203ENST00000560349 PDS5AQ29RF7 1337 aaKnown RBP16.35■□□□□ 0.21
CARMIL3-203ENST00000560349 GTF2IP78347 998 aa16.35■□□□□ 0.21
CARMIL3-203ENST00000560349 DOK7Q18PE1 504 aa16.35■□□□□ 0.21
CARMIL3-203ENST00000560349 SPTY2D1Q68D10 685 aaPredicted RBP16.35■□□□□ 0.21
CARMIL3-203ENST00000560349 BBOX1O75936 387 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 RXRBP28702 533 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 LINC00301Q8NCQ3 95 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 MYH15Q9Y2K3 1946 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 TSPY2A6NKD2 308 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 BTBD18B2RXH4 712 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 FMNL1O95466 1100 aaPredicted RBP16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 IFNAR1P17181 557 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 ATP2B1P20020 1258 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 ATP2B4P23634 1241 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 BTDP43251 543 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 PLCD1P51178 756 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 NR5A1Q13285 461 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 IQCA1Q86XH1 822 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 ATP8A2Q9NTI2 1148 aa16.34■□□□□ 0.21
CARMIL3-203ENST00000560349 TPM2P07951 284 aa16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 SRGNP10124 158 aa16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 HOXA10P31260 410 aaPredicted RBP16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 TYRO3Q06418 890 aa16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 TRIM29Q14134 588 aa16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 NBPF11Q86T75 865 aa16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 ZNF622Q969S3 477 aaKnown RBP eCLIP16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 CLSTN2Q9H4D0 955 aa16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 ECM29Q5VYK3 1845 aa16.33■□□□□ 0.21
CARMIL3-203ENST00000560349 SHISA4Q96DD7 197 aa16.33■□□□□ 0.2
CARMIL3-203ENST00000560349 RTEL1Q9NZ71 1219 aa16.33■□□□□ 0.2
CARMIL3-203ENST00000560349 CCDC88AQ3V6T2 1871 aa16.33■□□□□ 0.2
CARMIL3-203ENST00000560349 RRP9O43818 475 aaKnown RBP16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 ZNF500O60304 480 aaPredicted RBP16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 LETM1O95202 739 aaPredicted RBP16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 RASGRP2Q7LDG7 609 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 NLGN1Q8N2Q7 840 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 CRACR2BQ8N4Y2 399 aaPredicted RBP16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 OXER1Q8TDS5 423 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 RTFDC1Q9BY42 306 aaPredicted RBP16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 VPS54Q9P1Q0 977 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 MRVI1Q9Y6F6 885 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 USP17L3A6NCW0 530 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 USP17L4A6NCW7 530 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 PLSCR1O15162 318 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 CCDC192P0DO97 292 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 SNW1Q13573 536 aaKnown RBP16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 ANO6Q4KMQ2 910 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 USP17L1Q7RTZ2 530 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 LUZP1Q86V48 1076 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 TRIM22Q8IYM9 498 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 DDX19AQ9NUU7 478 aaKnown RBP16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 ARPP21Q9UBL0 812 aaPredicted RBP16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 MROH7-TTC4A0A0A0MT08 1334 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 ANKRD31Q8N7Z5 1873 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 SPTLC2O15270 562 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 NDUFA8P51970 172 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 ANO1Q5XXA6 986 aa16.32■□□□□ 0.2
CARMIL3-203ENST00000560349 CCDC73Q6ZRK6 1079 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms