RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 KLRG1Q96E93 195 aa26.06■■□□□ 1.76
SNX1-210ENST00000560260 HOOK2Q96ED9 719 aa26.06■■□□□ 1.76
SNX1-210ENST00000560260 ESYT1Q9BSJ8 1104 aa26.06■■□□□ 1.76
SNX1-210ENST00000560260 TBC1D12O60347 775 aa26.05■■□□□ 1.76
SNX1-210ENST00000560260 HLA-DOAP06340 250 aa26.05■■□□□ 1.76
SNX1-210ENST00000560260 TDO2P48775 406 aa26.05■■□□□ 1.76
SNX1-210ENST00000560260 GABPAQ06546 454 aa26.05■■□□□ 1.76
SNX1-210ENST00000560260 RRP1BQ14684 758 aaKnown RBP26.05■■□□□ 1.76
SNX1-210ENST00000560260 C12orf60Q5U649 245 aa26.05■■□□□ 1.76
SNX1-210ENST00000560260 RUFY2Q8WXA3 655 aa26.05■■□□□ 1.76
SNX1-210ENST00000560260 ZNF341Q9BYN7 854 aa26.05■■□□□ 1.76
SNX1-210ENST00000560260 EHD4Q9H223 541 aa26.05■■□□□ 1.76
SNX1-210ENST00000560260 ARPP21Q9UBL0 812 aaPredicted RBP26.05■■□□□ 1.76
SNX1-210ENST00000560260 PHF20L1A8MW92 1017 aa26.04■■□□□ 1.76
SNX1-210ENST00000560260 HUNKP57058 714 aa26.04■■□□□ 1.76
SNX1-210ENST00000560260 SBK1Q52WX2 424 aa26.04■■□□□ 1.76
SNX1-210ENST00000560260 LDLRAD1Q5T700 205 aa26.04■■□□□ 1.76
SNX1-210ENST00000560260 ARMC9Q7Z3E5 817 aa26.04■■□□□ 1.76
SNX1-210ENST00000560260 TTC6Q86TZ1 520 aa26.04■■□□□ 1.76
SNX1-210ENST00000560260 DYNLL2Q96FJ2 89 aa26.04■■□□□ 1.76
SNX1-210ENST00000560260 DDRGK1Q96HY6 314 aa26.04■■□□□ 1.76
SNX1-210ENST00000560260 ZNF112Q9UJU3 913 aa26.04■■□□□ 1.76
SNX1-210ENST00000560260 ABT1Q9ULW3 272 aaKnown RBP26.04■■□□□ 1.76
SNX1-210ENST00000560260 INPP5BP32019 993 aa26.03■■□□□ 1.76
SNX1-210ENST00000560260 MFAP1P55081 439 aaKnown RBP26.03■■□□□ 1.76
SNX1-210ENST00000560260 ALX1Q15699 326 aa26.03■■□□□ 1.76
SNX1-210ENST00000560260 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.03■■□□□ 1.76
SNX1-210ENST00000560260 CLMNQ96JQ2 1002 aa26.03■■□□□ 1.76
SNX1-210ENST00000560260 WRNIP1Q96S55 665 aa26.03■■□□□ 1.76
SNX1-210ENST00000560260 NAPBQ9H115 298 aa26.03■■□□□ 1.76
SNX1-210ENST00000560260 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.03■■□□□ 1.76
SNX1-210ENST00000560260 IREB2P48200 963 aaKnown RBP26.02■■□□□ 1.76
SNX1-210ENST00000560260 FOXP4Q8IVH2 680 aaPredicted RBP26.02■■□□□ 1.76
SNX1-210ENST00000560260 SLC44A5Q8NCS7 719 aa26.02■■□□□ 1.76
SNX1-210ENST00000560260 NACAP1Q9BZK3 213 aa26.02■■□□□ 1.76
SNX1-210ENST00000560260 HERC5Q9UII4 1024 aaKnown RBP26.02■■□□□ 1.76
SNX1-210ENST00000560260 SERPINB13Q9UIV8 391 aa26.02■■□□□ 1.76
SNX1-210ENST00000560260 ROBO3Q96MS0 1386 aa26.02■■□□□ 1.76
SNX1-210ENST00000560260 LAMA4Q16363 1823 aa26.02■■□□□ 1.76
SNX1-210ENST00000560260 ZMYM6O95789 1325 aa26.01■■□□□ 1.75
SNX1-210ENST00000560260 FGAP02671 866 aa26.01■■□□□ 1.75
SNX1-210ENST00000560260 PTH1RQ03431 593 aa26.01■■□□□ 1.75
SNX1-210ENST00000560260 DOCK1Q14185 1865 aa26.01■■□□□ 1.75
SNX1-210ENST00000560260 CRACR2BQ8N4Y2 399 aaPredicted RBP26.01■■□□□ 1.75
SNX1-210ENST00000560260 MINDY4BA8MYZ0 360 aa26■■□□□ 1.75
SNX1-210ENST00000560260 SHMT1P34896 483 aa26■■□□□ 1.75
SNX1-210ENST00000560260 VGLL4Q14135 290 aa26■■□□□ 1.75
SNX1-210ENST00000560260 SHROOM1Q2M3G4 852 aaPredicted RBP26■■□□□ 1.75
SNX1-210ENST00000560260 ZKSCAN4Q969J2 545 aaPredicted RBP26■■□□□ 1.75
SNX1-210ENST00000560260 DSCC1Q9BVC3 393 aa26■■□□□ 1.75
SNX1-210ENST00000560260 ATAD5Q96QE3 1844 aa26■■□□□ 1.75
SNX1-210ENST00000560260 RASSF10A6NK89 507 aa25.99■■□□□ 1.75
SNX1-210ENST00000560260 MAP3K9P80192 1104 aa25.99■■□□□ 1.75
SNX1-210ENST00000560260 TACC3Q9Y6A5 838 aa25.99■■□□□ 1.75
SNX1-210ENST00000560260 SNCAIPQ9Y6H5 919 aa25.99■■□□□ 1.75
SNX1-210ENST00000560260 JAG1P78504 1218 aa25.98■■□□□ 1.75
SNX1-210ENST00000560260 PPARAQ07869 468 aa25.98■■□□□ 1.75
SNX1-210ENST00000560260 C16orf86Q6ZW13 317 aa25.98■■□□□ 1.75
SNX1-210ENST00000560260 AMOTL1Q8IY63 956 aa25.98■■□□□ 1.75
SNX1-210ENST00000560260 ANKRD13AQ8IZ07 590 aa25.98■■□□□ 1.75
SNX1-210ENST00000560260 LSG1Q9H089 658 aaKnown RBP25.98■■□□□ 1.75
SNX1-210ENST00000560260 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.98■■□□□ 1.75
SNX1-210ENST00000560260 MYH8P13535 1937 aa25.97■■□□□ 1.75
SNX1-210ENST00000560260 TATDN1Q6P1N9 297 aa25.97■■□□□ 1.75
SNX1-210ENST00000560260 STK11IPQ8N1F8 1099 aa25.97■■□□□ 1.75
SNX1-210ENST00000560260 NBPF3Q9H094 633 aa25.97■■□□□ 1.75
SNX1-210ENST00000560260 NOL9Q5SY16 702 aaKnown RBP25.96■■□□□ 1.75
SNX1-210ENST00000560260 RASAL3Q86YV0 1011 aa25.96■■□□□ 1.75
SNX1-210ENST00000560260 CNKSR2Q8WXI2 1034 aa25.96■■□□□ 1.75
SNX1-210ENST00000560260 HHIPL1Q96JK4 782 aa25.96■■□□□ 1.75
SNX1-210ENST00000560260 TRIM34Q9BYJ4 488 aa25.96■■□□□ 1.75
SNX1-210ENST00000560260 ELP3Q9H9T3 547 aa25.96■■□□□ 1.75
SNX1-210ENST00000560260 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.96■■□□□ 1.75
SNX1-210ENST00000560260 GDF11O95390 407 aa25.95■■□□□ 1.75
SNX1-210ENST00000560260 CDK8P49336 464 aa25.95■■□□□ 1.75
SNX1-210ENST00000560260 HAND2P61296 217 aa25.95■■□□□ 1.75
SNX1-210ENST00000560260 CTDSPL2Q05D32 466 aa25.95■■□□□ 1.75
SNX1-210ENST00000560260 CYP4F22Q6NT55 531 aa25.95■■□□□ 1.75
SNX1-210ENST00000560260 RGMBQ6NW40 437 aa25.95■■□□□ 1.75
SNX1-210ENST00000560260 CASC1Q6TDU7 716 aa25.95■■□□□ 1.75
SNX1-210ENST00000560260 CAP2P40123 477 aa25.94■■□□□ 1.74
SNX1-210ENST00000560260 SCYL3Q8IZE3 742 aa25.94■■□□□ 1.74
SNX1-210ENST00000560260 ANAPC4Q9UJX5 808 aa25.94■■□□□ 1.74
SNX1-210ENST00000560260 PHIPQ8WWQ0 1821 aa25.94■■□□□ 1.74
SNX1-210ENST00000560260 UNCXA6NJT0 531 aa25.93■■□□□ 1.74
SNX1-210ENST00000560260 FAM155AB1AL88 458 aaPredicted RBP25.93■■□□□ 1.74
SNX1-210ENST00000560260 CTNND1O60716 968 aaKnown RBP25.93■■□□□ 1.74
SNX1-210ENST00000560260 GJA5P36382 358 aa25.93■■□□□ 1.74
SNX1-210ENST00000560260 ZNF157P51786 506 aaPredicted RBP25.93■■□□□ 1.74
SNX1-210ENST00000560260 DEFB115Q30KQ5 88 aa25.93■■□□□ 1.74
SNX1-210ENST00000560260 CCDC84Q86UT8 332 aaPredicted RBP25.93■■□□□ 1.74
SNX1-210ENST00000560260 TBC1D10CQ8IV04 446 aa25.93■■□□□ 1.74
SNX1-210ENST00000560260 MAP4K1Q92918 833 aa25.93■■□□□ 1.74
SNX1-210ENST00000560260 INCENPQ9NQS7 918 aa25.93■■□□□ 1.74
SNX1-210ENST00000560260 SWAP70Q9UH65 585 aa25.93■■□□□ 1.74
SNX1-210ENST00000560260 CSADQ9Y600 493 aa25.93■■□□□ 1.74
SNX1-210ENST00000560260 CEP350Q5VT06 3117 aa25.93■■□□□ 1.74
SNX1-210ENST00000560260 SLC10A3P09131 477 aa25.92■■□□□ 1.74
SNX1-210ENST00000560260 ANO2Q9NQ90 1003 aa25.92■■□□□ 1.74
SNX1-210ENST00000560260 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 418.3 ms