RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ALX1Q15699 326 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 NOM1Q5C9Z4 860 aaKnown RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 EARS2Q5JPH6 523 aaKnown RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 INTS5Q6P9B9 1019 aaKnown RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 TIGD1Q96MW7 591 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 TMX1Q9H3N1 280 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 SERTAD1Q9UHV2 236 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 IKBKBO14920 756 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 IFNAR1P17181 557 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 IL6STP40189 918 aaPredicted RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 GYG1P46976 350 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 MDM2Q00987 491 aaPredicted RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 WTAPQ15007 396 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 RTN1Q16799 776 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 FAM177A1Q8N128 213 aaPredicted RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 JMYQ8N9B5 988 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 KRI1Q8N9T8 703 aaKnown RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 UTP14AQ9BVJ6 771 aaKnown RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 CABP5Q9NP86 173 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 GOLGB1Q14789 3259 aaKnown RBP14.83□□□□□ -0.04
LDLR-207ENST00000558013 WNT7AO00755 349 aa14.82□□□□□ -0.04
LDLR-207ENST00000558013 FBXO38Q6PIJ6 1188 aa14.82□□□□□ -0.04
LDLR-207ENST00000558013 MED15Q96RN5 788 aa14.82□□□□□ -0.04
LDLR-207ENST00000558013 CUTAO60888 179 aa14.82□□□□□ -0.04
LDLR-207ENST00000558013 EIF5P55010 431 aaKnown RBP14.82□□□□□ -0.04
LDLR-207ENST00000558013 ERCC6LQ2NKX8 1250 aa14.82□□□□□ -0.04
LDLR-207ENST00000558013 C3orf67Q6ZVT6 689 aa14.82□□□□□ -0.04
LDLR-207ENST00000558013 COL4A1P02462 1669 aa14.82□□□□□ -0.04
LDLR-207ENST00000558013 ITGB4P16144 1822 aa14.82□□□□□ -0.04
LDLR-207ENST00000558013 ERVV-1B6SEH8 477 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 CYP7A1P22680 504 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 CRKLP46109 303 aaKnown RBP14.81□□□□□ -0.04
LDLR-207ENST00000558013 TPM4P67936 248 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 CHRNDQ07001 517 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 HOMER1Q86YM7 354 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 CRACR2BQ8N4Y2 399 aaPredicted RBP14.81□□□□□ -0.04
LDLR-207ENST00000558013 CCDC150Q8NCX0 1101 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 FBXO2Q9UK22 296 aaPredicted RBP14.81□□□□□ -0.04
LDLR-207ENST00000558013 BAZ2BQ9UIF8 2168 aaKnown RBP14.81□□□□□ -0.04
LDLR-207ENST00000558013 NUP98P52948 1817 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 ATP6V1AP38606 617 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 VPS54Q9P1Q0 977 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 NIP7Q9Y221 180 aaKnown RBP eCLIP14.81□□□□□ -0.04
LDLR-207ENST00000558013 LRP6O75581 1613 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 DYNLL1P63167 89 aaKnown RBP14.81□□□□□ -0.04
LDLR-207ENST00000558013 FANCBQ8NB91 859 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 DNAI1Q9UI46 699 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 MAN1B1Q9UKM7 699 aa14.81□□□□□ -0.04
LDLR-207ENST00000558013 FAM237AA0A1B0GTK4 181 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 COBLO75128 1261 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 ITPK1Q13572 414 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 ZNF654Q8IZM8 581 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 A0A087X0B3 334 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 ADKP55263 362 aaKnown RBP14.8□□□□□ -0.04
LDLR-207ENST00000558013 PPARAQ07869 468 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 STAG1Q8WVM7 1258 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 EPSTI1Q96J88 318 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 KRT23Q9C075 422 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 CSRNP2Q9H175 543 aa14.8□□□□□ -0.04
LDLR-207ENST00000558013 SAMSN1Q9NSI8 373 aaKnown RBP14.8□□□□□ -0.04
LDLR-207ENST00000558013 DMTNQ08495 405 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 POSTNQ15063 836 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 SLC4A8Q2Y0W8 1093 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 OLFM4Q6UX06 510 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 TRIM22Q8IYM9 498 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 RAI14Q9P0K7 980 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 NFE2L3Q9Y4A8 694 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 SLU7O95391 586 aaKnown RBP14.79□□□□□ -0.04
LDLR-207ENST00000558013 PTPREP23469 700 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 SAFBQ15424 915 aaKnown RBP eCLIP14.79□□□□□ -0.04
LDLR-207ENST00000558013 SYCP1Q15431 976 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 VSTM4Q8IW00 320 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 CNNM2Q9H8M5 875 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 MYH3P11055 1940 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 CAMTA2O94983 1202 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 PLEKHA8P1O95397 391 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 TOP1P11387 765 aaKnown RBP14.79□□□□□ -0.04
LDLR-207ENST00000558013 STAMQ92783 540 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 NACAP1Q9BZK3 213 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 ST7Q9NRC1 585 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 KCND1Q9NSA2 647 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 CGNQ9P2M7 1197 aaKnown RBP14.79□□□□□ -0.04
LDLR-207ENST00000558013 DDX41Q9UJV9 622 aaKnown RBP14.79□□□□□ -0.04
LDLR-207ENST00000558013 ABCA3Q99758 1704 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 TNKSO95271 1327 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 ECM29Q5VYK3 1845 aa14.79□□□□□ -0.04
LDLR-207ENST00000558013 AFMP43652 599 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 UBAC1Q9BSL1 405 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 CCDC87Q9NVE4 849 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 ZNF446Q9NWS9 450 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 ERICH2A1L162 156 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 ADAMTS3O15072 1205 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 NMT2O60551 498 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 VEGFAP15692 232 aaPredicted RBP14.78□□□□□ -0.04
LDLR-207ENST00000558013 IGHMBP2P38935 993 aaKnown RBP14.78□□□□□ -0.04
LDLR-207ENST00000558013 TRIM65Q6PJ69 517 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 SMYD4Q8IYR2 804 aaPredicted RBP14.78□□□□□ -0.04
LDLR-207ENST00000558013 ZNF384Q8TF68 577 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 EPC1Q9H2F5 836 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms