RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 A0A0G2JS52 829 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 FMNL1O95466 1100 aaPredicted RBP18.64■□□□□ 0.58
SHMT2-232ENST00000557487 A1BGP04217 495 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 ERCC5P28715 1186 aaPredicted RBP18.64■□□□□ 0.58
SHMT2-232ENST00000557487 RCAN1P53805 252 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 POSTNQ15063 836 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 ISM2Q6H9L7 571 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 CYB5R4Q7L1T6 521 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 TBC1D10CQ8IV04 446 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 NOSTRINQ8IVI9 506 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 IGDCC4Q8TDY8 1250 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 NAA15Q9BXJ9 866 aaKnown RBP18.64■□□□□ 0.58
SHMT2-232ENST00000557487 CNNM2Q9H8M5 875 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 CEP131Q9UPN4 1083 aa18.64■□□□□ 0.58
SHMT2-232ENST00000557487 BRWD3Q6RI45 1802 aa18.64■□□□□ 0.57
SHMT2-232ENST00000557487 IFNAR1P17181 557 aa18.64■□□□□ 0.57
SHMT2-232ENST00000557487 SARSP49591 514 aaKnown RBP18.64■□□□□ 0.57
SHMT2-232ENST00000557487 RSRC2Q7L4I2 434 aaKnown RBP18.64■□□□□ 0.57
SHMT2-232ENST00000557487 ZBTB38Q8NAP3 1195 aaPredicted RBP18.64■□□□□ 0.57
SHMT2-232ENST00000557487 FOXP1Q9H334 677 aaPredicted RBP18.64■□□□□ 0.57
SHMT2-232ENST00000557487 INTS13Q9NVM9 706 aa18.64■□□□□ 0.57
SHMT2-232ENST00000557487 RIC1Q4ADV7 1423 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 UQCRFS1P1P0C7P4 283 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 PTPREP23469 700 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 CDC27P30260 824 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 GNG11P61952 73 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 GPS2Q13227 327 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 NFXL1Q6ZNB6 911 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 RAB11FIP4Q86YS3 637 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 FOXP4Q8IVH2 680 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-232ENST00000557487 TXLNBQ8N3L3 684 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 SMARCE1Q969G3 411 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 AIFM3Q96NN9 605 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 PANX2Q96RD6 677 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 LY9Q9HBG7 655 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-232ENST00000557487 MAN1B1Q9UKM7 699 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 UBN2Q6ZU65 1347 aa18.63■□□□□ 0.57
SHMT2-232ENST00000557487 TMEM232C9JQI7 657 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 CDK11BP21127 795 aaKnown RBP18.62■□□□□ 0.57
SHMT2-232ENST00000557487 PPP2R3AQ06190 1150 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 MORC3Q14149 939 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 SLC9C2Q5TAH2 1124 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 TC2NQ8N9U0 490 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 ZCRB1Q8TBF4 217 aaKnown RBP18.62■□□□□ 0.57
SHMT2-232ENST00000557487 UPF1Q92900 1129 aaKnown RBP eCLIP18.62■□□□□ 0.574e-7■■■■□ 25.7
SHMT2-232ENST00000557487 SYTL4Q96C24 671 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-232ENST00000557487 CLIC6Q96NY7 704 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 TEX13AQ9BXU3 409 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-232ENST00000557487 ARFGAP3Q9NP61 516 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 RIPOR2Q9Y4F9 1068 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 POTEB2H3BUK9 544 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 MCAMP43121 646 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 TMEM67Q5HYA8 995 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 METTL24Q5JXM2 366 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 CC2D1AQ6P1N0 951 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-232ENST00000557487 MICU3Q86XE3 530 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 TRIM22Q8IYM9 498 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 GOLGA1Q92805 767 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 NFE2L3Q9Y4A8 694 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 SLC12A7Q9Y666 1083 aa18.62■□□□□ 0.57
SHMT2-232ENST00000557487 MMP1P03956 469 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 BRD3Q15059 726 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 KIF6Q6ZMV9 814 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 KRT23Q9C075 422 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 FAM217BQ9NTX9 383 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-232ENST00000557487 RAI14Q9P0K7 980 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 ECM29Q5VYK3 1845 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 CCDC196A0A1B0GTZ2 297 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 FANCGO15287 622 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 RANBP6O60518 1105 aaKnown RBP18.61■□□□□ 0.57
SHMT2-232ENST00000557487 CCDC175P0C221 793 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 BMP6P22004 513 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 PLCD1P51178 756 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 MSL3Q8N5Y2 521 aaKnown RBP18.61■□□□□ 0.57
SHMT2-232ENST00000557487 PHKBQ93100 1093 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 KIFC2Q96AC6 838 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 TSPYL1Q9H0U9 437 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 ST7Q9NRC1 585 aa18.61■□□□□ 0.57
SHMT2-232ENST00000557487 FBXO2Q9UK22 296 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-232ENST00000557487 WNK3Q9BYP7 1800 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 AKAP11Q9UKA4 1901 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 CCDC151A5D8V7 595 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 B4E1Z4 1266 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 SEMA3EO15041 775 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 APPP05067 770 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 IL2RBP14784 551 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 ARID4AP29374 1257 aaPredicted RBP18.6■□□□□ 0.57
SHMT2-232ENST00000557487 PDE4BQ07343 736 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 STK11IPQ8N1F8 1099 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 TMTC2Q8N394 836 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 SPATA20Q8TB22 786 aa18.6■□□□□ 0.57
SHMT2-232ENST00000557487 SRPRBQ9Y5M8 271 aaKnown RBP18.6■□□□□ 0.57
SHMT2-232ENST00000557487 TIAM2Q8IVF5 1701 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 A0A1B0GTH6 734 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 TBC1D8O95759 1140 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 NR1I3Q14994 352 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 DDB1Q16531 1140 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 PDILTQ8N807 584 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 STRBPQ96SI9 672 aaKnown RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms