RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 RASGRP4Q8TDF6 673 aa13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 EPSTI1Q96J88 318 aa13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 STRBPQ96SI9 672 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 CARD10Q9BWT7 1032 aa13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 HPS5Q9UPZ3 1129 aa13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 CHRNDQ07001 517 aa13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 MCM6Q14566 821 aa13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 ILDR1Q86SU0 546 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 NBPF5PQ86XG9 351 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 ISCA1Q9BUE6 129 aa13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 TRIM34Q9BYJ4 488 aa13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 SHC4Q6S5L8 630 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 KRBA2Q6ZNG9 492 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 FANCBQ8NB91 859 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 PPP1R13BQ96KQ4 1090 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 UBR1Q8IWV7 1749 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 CCDC194A0A1B0GVG4 234 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 CCP110O43303 1012 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 TNNT3P45378 269 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 PPARAQ07869 468 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 CSRNP2Q9H175 543 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 CTNND2Q9UQB3 1225 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 MROH7-TTC4A0A0A0MT08 1334 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 KIF2AO00139 706 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 NMT2O60551 498 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 PHACTR2O75167 634 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 RHOXF2BP0C7M4 288 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 PRR29P0C7W0 189 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 EVCP57679 992 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 KRT222Q8N1A0 295 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 ZNF397Q8NF99 534 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 DRC1Q96MC2 740 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 RHOXF2Q9BQY4 288 aa13.85□□□□□ -0.19
CCDC88C-211ENST00000556726 CUTAO60888 179 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 GPKOWQ92917 476 aaPredicted RBP eCLIP13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 RIPOR2Q9Y4F9 1068 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 A0A1W2PQ27 194 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 A0A1W2PQ64 194 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 A0A1W2PQD8 194 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 ZPR1O75312 459 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 KCNA4P22459 653 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 ARMCX5Q6P1M9 558 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 TANGO6Q9C0B7 1094 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 ST7Q9NRC1 585 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 MAGEC2Q9UBF1 373 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 ZNF652Q9Y2D9 606 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 SEC31AO94979 1220 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 DEXIO95424 95 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 IDEP14735 1019 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 KRT2P35908 639 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 EIF6P56537 245 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 FKBP15Q5T1M5 1219 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 KAT14Q9H8E8 782 aa13.84□□□□□ -0.19
CCDC88C-211ENST00000556726 UBA7P41226 1012 aa13.83□□□□□ -0.19
CCDC88C-211ENST00000556726 ZNF569Q5MCW4 686 aa13.83□□□□□ -0.19
CCDC88C-211ENST00000556726 IGSF22Q8N9C0 903 aa13.83□□□□□ -0.19
CCDC88C-211ENST00000556726 ENGASEQ8NFI3 743 aa13.83□□□□□ -0.19
CCDC88C-211ENST00000556726 CCDC102AQ96A19 550 aa13.83□□□□□ -0.19
CCDC88C-211ENST00000556726 ERO1AQ96HE7 468 aa13.83□□□□□ -0.19
CCDC88C-211ENST00000556726 TAB2Q9NYJ8 693 aa13.83□□□□□ -0.19
CCDC88C-211ENST00000556726 ZNF219Q9P2Y4 722 aaPredicted RBP13.83□□□□□ -0.19
CCDC88C-211ENST00000556726 KIF5CO60282 957 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 PLEKHA8P1O95397 391 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 GOLGA8HP0CJ92 632 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 CRKLP46109 303 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 UBE3CQ15386 1083 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 RILPL1Q5EBL4 403 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 ZNF444Q8N0Y2 327 aaPredicted RBP13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 CCDC87Q9NVE4 849 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 UBN2Q6ZU65 1347 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 FBXO38Q6PIJ6 1188 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 NKX2-3Q8TAU0 364 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 GPR101Q96P66 508 aaPredicted RBP13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 CPVLQ9H3G5 476 aa13.83□□□□□ -0.2
CCDC88C-211ENST00000556726 CLSTN1O94985 981 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 IKQ13123 557 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 CCDC178Q5BJE1 867 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 PPARDQ03181 441 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 NGLY1Q96IV0 654 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 CDK5RAP3Q96JB5 506 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 IRX2Q9BZI1 471 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 LY9Q9HBG7 655 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 GUCA1BQ9UMX6 200 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 AKAP12Q02952 1782 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 STAT6P42226 847 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 MATR3P43243 847 aaKnown RBP eCLIP13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 CCZ1BP86790 482 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 CCZ1P86791 482 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 KIAA1328Q86T90 577 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 CAPZA3Q96KX2 299 aa13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 ALDH8A1Q9H2A2 487 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-211ENST00000556726 SOS2Q07890 1332 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 FAM98CQ17RN3 349 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 NOC3LQ8WTT2 800 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 TRIM47Q96LD4 638 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 GDAP1L1Q96MZ0 367 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 EPB41L4AQ9HCS5 686 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 OGFRQ9NZT2 677 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 PALLDQ8WX93 1383 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms