RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 SNX29Q8TEQ0 813 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 TRPC6Q9Y210 931 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 PNMA6EA0A0J9YXQ4 647 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 MYCP01106 439 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-220ENST00000555612 ZSCAN23Q3MJ62 389 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 ANKRD35Q8N283 1001 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 LMBR1Q8WVP7 490 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 BBXQ8WY36 941 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-220ENST00000555612 SNX21Q969T3 373 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 ARPP21Q9UBL0 812 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-220ENST00000555612 RASAL2Q9UJF2 1139 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 ABT1Q9ULW3 272 aaKnown RBP9.23□□□□□ -0.93
SYNE2-220ENST00000555612 CALRP27797 417 aaKnown RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 CHRNDQ07001 517 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 LRWD1Q9UFC0 647 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 PBRM1Q86U86 1689 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 MAGI3Q5TCQ9 1506 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 TACC1O75410 805 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 GIGYF1O75420 1035 aaPredicted RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 RILPL1Q5EBL4 403 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 SREK1Q8WXA9 508 aaKnown RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 MAK16Q9BXY0 300 aaKnown RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 GTPBP4Q9BZE4 634 aaKnown RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 ERICH4A6NGS2 130 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 USP17L12C9JPN9 530 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 USP17L21D6R901 530 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 PPARAQ07869 468 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 FRMPD2Q68DX3 1309 aaPredicted RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 ARID4AP29374 1257 aaPredicted RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 CERKLQ49MI3 558 aaPredicted RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 KRT25Q7Z3Z0 450 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 DIS3L2Q8IYB7 885 aaKnown RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 FLOT1O75955 427 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 CKAP4Q07065 602 aaKnown RBP9.22□□□□□ -0.93
SYNE2-220ENST00000555612 GNPTABQ3T906 1256 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 TTC38Q5R3I4 469 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 CCDC63Q8NA47 563 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 CARD10Q9BWT7 1032 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 DBNDD1Q9H9R9 158 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 TBC1D7Q9P0N9 293 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 CTNND2Q9UQB3 1225 aa9.22□□□□□ -0.93
SYNE2-220ENST00000555612 CCDC175P0C221 793 aa9.21□□□□□ -0.93
SYNE2-220ENST00000555612 MKRN3Q13064 507 aaKnown RBP9.21□□□□□ -0.93
SYNE2-220ENST00000555612 LRRC47Q8N1G4 583 aaKnown RBP9.21□□□□□ -0.93
SYNE2-220ENST00000555612 ZBTB38Q8NAP3 1195 aaPredicted RBP9.21□□□□□ -0.93
SYNE2-220ENST00000555612 DDX12PQ92771 950 aa9.21□□□□□ -0.93
SYNE2-220ENST00000555612 PHKBQ93100 1093 aa9.21□□□□□ -0.93
SYNE2-220ENST00000555612 ANO3Q9BYT9 981 aa9.21□□□□□ -0.93
SYNE2-220ENST00000555612 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.21□□□□□ -0.93
SYNE2-220ENST00000555612 A0A1B0GVL5 298 aa9.21□□□□□ -0.93
SYNE2-220ENST00000555612 CTR9Q6PD62 1173 aa9.21□□□□□ -0.93
SYNE2-220ENST00000555612 UNC5CLQ8IV45 518 aa9.21□□□□□ -0.93
SYNE2-220ENST00000555612 MYCT1Q8N699 235 aa9.21□□□□□ -0.93
SYNE2-220ENST00000555612 PAIP2Q9BPZ3 127 aaKnown RBP9.21□□□□□ -0.93
SYNE2-220ENST00000555612 RASA3Q14644 834 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 ZNF710Q8N1W2 664 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 CCDC155Q8N6L0 562 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 IL17REQ8NFR9 667 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 TRIM35Q9UPQ4 493 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 ZBTB1Q9Y2K1 713 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 MAP3K15Q6ZN16 1313 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 POTEB2H3BUK9 544 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 ATP2A1O14983 1001 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 ICA1Q05084 483 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 LZTS2Q9BRK4 669 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 MAPK8IP1Q9UQF2 711 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 ZNF804BA4D1E1 1349 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 KIF5AQ12840 1032 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 BIRC2Q13490 618 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 KLHL40Q2TBA0 621 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 DYMQ7RTS9 669 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 CEP112Q8N8E3 955 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 KIFAP3Q92845 792 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 NBPF3Q9H094 633 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 DNM3Q9UQ16 869 aa9.21□□□□□ -0.94
SYNE2-220ENST00000555612 SYT1P21579 422 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 CALCRLQ16602 461 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 HACE1Q8IYU2 909 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 FAM200AQ8TCP9 573 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 SDR42E1Q8WUS8 393 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 DAPK3O43293 454 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 CALUO43852 315 aaPredicted RBP9.2□□□□□ -0.94
SYNE2-220ENST00000555612 CLCN1P35523 988 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 ARHGEF6Q15052 776 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 MIER3Q7Z3K6 550 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 TPH2Q8IWU9 490 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 DPP9Q86TI2 863 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 GAS7O60861 476 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 RAD17O75943 681 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 KRT83P78385 493 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 DALRD3Q5D0E6 543 aaKnown RBP9.2□□□□□ -0.94
SYNE2-220ENST00000555612 UTP14CQ5TAP6 766 aaKnown RBP9.2□□□□□ -0.94
SYNE2-220ENST00000555612 EDC3Q96F86 508 aaKnown RBP9.2□□□□□ -0.94
SYNE2-220ENST00000555612 CCDC114Q96M63 670 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 NOC4LQ9BVI4 516 aaKnown RBP9.2□□□□□ -0.94
SYNE2-220ENST00000555612 TXNDC16Q9P2K2 825 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 SERPINA10Q9UK55 444 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 KCNJ14Q9UNX9 436 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 FAM169AQ9Y6X4 670 aa9.2□□□□□ -0.94
SYNE2-220ENST00000555612 XDHP47989 1333 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms