RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 KCNB2Q92953 911 aa12.13□□□□□ -0.47
SYNE2-215ENST00000554997 SERPINB13Q9UIV8 391 aa12.13□□□□□ -0.47
SYNE2-215ENST00000554997 MYH7P12883 1935 aa12.13□□□□□ -0.47
SYNE2-215ENST00000554997 ADAMTSL1Q8N6G6 1762 aa12.13□□□□□ -0.47
SYNE2-215ENST00000554997 AK9Q5TCS8 1911 aa12.12□□□□□ -0.47
SYNE2-215ENST00000554997 CYP21A2P08686 494 aa12.12□□□□□ -0.47
SYNE2-215ENST00000554997 RNF20Q5VTR2 975 aa12.12□□□□□ -0.47
SYNE2-215ENST00000554997 CREB3L3Q68CJ9 461 aa12.12□□□□□ -0.47
SYNE2-215ENST00000554997 CDAN1Q8IWY9 1227 aa12.12□□□□□ -0.47
SYNE2-215ENST00000554997 SMC1BQ8NDV3 1235 aa12.12□□□□□ -0.47
SYNE2-215ENST00000554997 CDCA5Q96FF9 252 aa12.12□□□□□ -0.47
SYNE2-215ENST00000554997 ZNF287Q9HBT7 754 aa12.12□□□□□ -0.47
SYNE2-215ENST00000554997 SWAP70Q9UH65 585 aa12.12□□□□□ -0.47
SYNE2-215ENST00000554997 HERC5Q9UII4 1024 aaKnown RBP12.12□□□□□ -0.47
SYNE2-215ENST00000554997 SMIM22K7EJ46 135 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 SLC27A2O14975 620 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 PCP11498 1178 aaKnown RBP12.11□□□□□ -0.47
SYNE2-215ENST00000554997 ZKSCAN1P17029 563 aaPredicted RBP12.11□□□□□ -0.47
SYNE2-215ENST00000554997 NF2P35240 595 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 CDK8P49336 464 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 EVX2Q03828 476 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 CTDSPL2Q05D32 466 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 PDE4BQ07343 736 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 SLC4A8Q2Y0W8 1093 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 DCAF15Q66K64 600 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 TATDN1Q6P1N9 297 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 C16orf86Q6ZW13 317 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 MIGA2Q7L4E1 593 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 CRACR2BQ8N4Y2 399 aaPredicted RBP12.11□□□□□ -0.47
SYNE2-215ENST00000554997 TRIM34Q9BYJ4 488 aa12.11□□□□□ -0.47
SYNE2-215ENST00000554997 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.11□□□□□ -0.47
SYNE2-215ENST00000554997 TRAF5O00463 557 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 PPP1R12BO60237 982 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-215ENST00000554997 USP2O75604 605 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-215ENST00000554997 MCCP23508 829 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 NT5C2P49902 561 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 HAND2P61296 217 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 FSTL1Q12841 308 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 AKNAD1Q5T1N1 836 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 MFSD6Q6ZSS7 791 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 STAG1Q8WVM7 1258 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 DYNLL2Q96FJ2 89 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 NBPF3Q9H094 633 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 RNF41Q9H4P4 317 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-215ENST00000554997 UPF2Q9HAU5 1272 aaKnown RBP12.1□□□□□ -0.47
SYNE2-215ENST00000554997 MKNK2Q9HBH9 465 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 ZNF112Q9UJU3 913 aa12.1□□□□□ -0.47
SYNE2-215ENST00000554997 ROBO3Q96MS0 1386 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 UNCXA6NJT0 531 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 PHF20L1A8MW92 1017 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 E7EWF7 191 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 ORC4O43929 436 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 SLURP2P0DP57 97 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 SHMT1P34896 483 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 FKBP1BP68106 108 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 MAP3K11Q16584 847 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 CST9Q5W186 159 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 RASEFQ8IZ41 740 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 ZNF444Q8N0Y2 327 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-215ENST00000554997 CCDC17Q96LX7 622 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 ZNF341Q9BYN7 854 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 DNAJC18Q9H819 358 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 INCENPQ9NQS7 918 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.09□□□□□ -0.47
SYNE2-215ENST00000554997 TACC3Q9Y6A5 838 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 PASKQ96RG2 1323 aa12.09□□□□□ -0.47
SYNE2-215ENST00000554997 CTNND1O60716 968 aaKnown RBP12.08□□□□□ -0.48
SYNE2-215ENST00000554997 RBM25P49756 843 aaKnown RBP12.08□□□□□ -0.48
SYNE2-215ENST00000554997 ANAPC15P60006 121 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 MAP3K9P80192 1104 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 FMR1Q06787 632 aaKnown RBP eCLIP12.08□□□□□ -0.48
SYNE2-215ENST00000554997 TRDNQ13061 729 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 KRT32Q14532 448 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 CERKLQ49MI3 558 aaPredicted RBP12.08□□□□□ -0.48
SYNE2-215ENST00000554997 STK11IPQ8N1F8 1099 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 KLRG1Q96E93 195 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 IL17RAQ96F46 866 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 C22orf23Q9BZE7 217 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 KRT23Q9C075 422 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 CNNM2Q9H8M5 875 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 SNX14Q9Y5W7 946 aa12.08□□□□□ -0.48
SYNE2-215ENST00000554997 FAM196BA6NMK8 535 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 PRDM1O75626 825 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 CELF2O95319 508 aaKnown RBP12.07□□□□□ -0.48
SYNE2-215ENST00000554997 RASA1P20936 1047 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 CAP2P40123 477 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 IREB2P48200 963 aaKnown RBP12.07□□□□□ -0.48
SYNE2-215ENST00000554997 PRKG1Q13976 671 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 ARMC9Q7Z3E5 817 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 TBC1D10CQ8IV04 446 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 C2orf69Q8N8R5 385 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 SLC44A5Q8NCS7 719 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 NCOA7Q8NI08 942 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 ESR2Q92731 530 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 GINM1Q9NU53 330 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 TAF6LQ9Y6J9 622 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 ECM29Q5VYK3 1845 aa12.07□□□□□ -0.48
SYNE2-215ENST00000554997 HMGB1P09429 215 aaKnown RBP12.06□□□□□ -0.48
SYNE2-215ENST00000554997 PSMA5P28066 241 aa12.06□□□□□ -0.48
SYNE2-215ENST00000554997 TFAP4Q01664 338 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms