RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NDUFB9Q9Y6M9 179 aa19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 DDX60LQ5H9U9 1706 aaKnown RBP19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 PTPRFP10586 1907 aa19.49■□□□□ 0.71
CCDC88C-209ENST00000554872 RGS19P49795 217 aa19.49■□□□□ 0.71
CCDC88C-209ENST00000554872 SP3Q02447 781 aa19.49■□□□□ 0.71
CCDC88C-209ENST00000554872 FOXP4Q8IVH2 680 aaPredicted RBP19.49■□□□□ 0.71
CCDC88C-209ENST00000554872 RIOK1Q9BRS2 568 aaKnown RBP19.49■□□□□ 0.71
CCDC88C-209ENST00000554872 SLC45A1Q9Y2W3 748 aa19.49■□□□□ 0.71
CCDC88C-209ENST00000554872 ADGRA2Q96PE1 1338 aa19.49■□□□□ 0.71
CCDC88C-209ENST00000554872 PDE6AP16499 860 aa19.48■□□□□ 0.71
CCDC88C-209ENST00000554872 CAP2P40123 477 aa19.48■□□□□ 0.71
CCDC88C-209ENST00000554872 DYNLL1P63167 89 aaKnown RBP19.48■□□□□ 0.71
CCDC88C-209ENST00000554872 FASTKD5Q7L8L6 764 aaKnown RBP19.48■□□□□ 0.71
CCDC88C-209ENST00000554872 MAPKAPK5Q8IW41 473 aa19.48■□□□□ 0.71
CCDC88C-209ENST00000554872 ZHX2Q9Y6X8 837 aa19.48■□□□□ 0.71
CCDC88C-209ENST00000554872 ATAD5Q96QE3 1844 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 TCRBV5S4A2TA0A5A2 114 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 GOLIM4O00461 696 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 SLURP2P0DP57 97 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 AAMPQ13685 434 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 SLC9C2Q5TAH2 1124 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 OTOP1Q7RTM1 612 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 EHD4Q9H223 541 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 PAG1Q9NWQ8 432 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 TAOK2Q9UL54 1235 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 HPS5Q9UPZ3 1129 aa19.47■□□□□ 0.71
CCDC88C-209ENST00000554872 CCDC85CA6NKD9 419 aa19.46■□□□□ 0.71
CCDC88C-209ENST00000554872 ARHGEF6Q15052 776 aa19.46■□□□□ 0.71
CCDC88C-209ENST00000554872 GPAT2Q6NUI2 795 aa19.46■□□□□ 0.71
CCDC88C-209ENST00000554872 MIGA1Q8NAN2 632 aa19.46■□□□□ 0.71
CCDC88C-209ENST00000554872 DNAJC18Q9H819 358 aa19.46■□□□□ 0.71
CCDC88C-209ENST00000554872 PCDHB15Q9Y5E8 787 aa19.46■□□□□ 0.71
CCDC88C-209ENST00000554872 LOC285556D6RIA3 1793 aa19.45■□□□□ 0.7
CCDC88C-209ENST00000554872 PDHXO00330 501 aa19.45■□□□□ 0.7
CCDC88C-209ENST00000554872 HLA-DOAP06340 250 aa19.45■□□□□ 0.7
CCDC88C-209ENST00000554872 C17orf99Q6UX52 265 aa19.45■□□□□ 0.7
CCDC88C-209ENST00000554872 PARK7Q99497 189 aaKnown RBP19.45■□□□□ 0.7
CCDC88C-209ENST00000554872 DNAJC2Q99543 621 aaKnown RBP19.45■□□□□ 0.7
CCDC88C-209ENST00000554872 ECHDC1Q9NTX5 307 aa19.45■□□□□ 0.7
CCDC88C-209ENST00000554872 PALD1Q9ULE6 856 aa19.45■□□□□ 0.7
CCDC88C-209ENST00000554872 MAGEB6P1A0A0J9YX57 407 aa19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 FAM196BA6NMK8 535 aa19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 ASNSP08243 561 aa19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 RRP1BQ14684 758 aaKnown RBP19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 CD99L2Q8TCZ2 262 aa19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 WDR18Q9BV38 432 aa19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 BOLA2Q9H3K6 86 aa19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 TRIM17Q9Y577 477 aa19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 MYH1P12882 1939 aa19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 ZNF532Q9HCE3 1301 aa19.44■□□□□ 0.7
CCDC88C-209ENST00000554872 GNRH1P01148 92 aa19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 ADD2P35612 726 aa19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 USP5P45974 858 aa19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 SH3D19Q5HYK7 790 aa19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 PROCA1Q8NCQ7 364 aaPredicted RBP19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 ZNF280CQ8ND82 737 aa19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 GPATCH3Q96I76 525 aa19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 CRNKL1Q9BZJ0 848 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 EFCC1Q9HA90 598 aa19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 MYH7P12883 1935 aa19.43■□□□□ 0.7
CCDC88C-209ENST00000554872 NAV1Q8NEY1 1877 aa19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 USP17L5A8MUK1 530 aa19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 SMARCA5O60264 1052 aaPredicted RBP19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 LACTBP83111 547 aaPredicted RBP19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 UBE3CQ15386 1083 aa19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 TATDN1Q6P1N9 297 aa19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 TTC6Q86TZ1 520 aa19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 CRACR2BQ8N4Y2 399 aaPredicted RBP19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 EDC3Q96F86 508 aaKnown RBP19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 SERPINB13Q9UIV8 391 aa19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 AGTPBP1Q9UPW5 1226 aa19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 PTPN22Q9Y2R2 807 aa19.42■□□□□ 0.7
CCDC88C-209ENST00000554872 TRIM75PA6NK02 468 aa19.41■□□□□ 0.7
CCDC88C-209ENST00000554872 CAP1Q01518 475 aa19.41■□□□□ 0.7
CCDC88C-209ENST00000554872 YTHDC1Q96MU7 727 aaKnown RBP19.41■□□□□ 0.7
CCDC88C-209ENST00000554872 TRIM34Q9BYJ4 488 aa19.41■□□□□ 0.7
CCDC88C-209ENST00000554872 AS3MTQ9HBK9 375 aa19.41■□□□□ 0.7
CCDC88C-209ENST00000554872 BCRP11274 1271 aa19.4■□□□□ 0.7
CCDC88C-209ENST00000554872 HDAC1Q13547 482 aaPredicted RBP19.4■□□□□ 0.7
CCDC88C-209ENST00000554872 ZSCAN25Q6NSZ9 544 aa19.4■□□□□ 0.7
CCDC88C-209ENST00000554872 CRBNQ96SW2 442 aa19.4■□□□□ 0.7
CCDC88C-209ENST00000554872 SAP30BPQ9UHR5 308 aaKnown RBP19.4■□□□□ 0.7
CCDC88C-209ENST00000554872 TTC41PQ6P2S7 1318 aa19.4■□□□□ 0.7
CCDC88C-209ENST00000554872 PRMT2P55345 433 aa19.39■□□□□ 0.69
CCDC88C-209ENST00000554872 GABPAQ06546 454 aa19.39■□□□□ 0.69
CCDC88C-209ENST00000554872 SPP2Q13103 211 aa19.39■□□□□ 0.69
CCDC88C-209ENST00000554872 KIF22Q14807 665 aa19.39■□□□□ 0.69
CCDC88C-209ENST00000554872 ARMC5Q96C12 935 aa19.39■□□□□ 0.69
CCDC88C-209ENST00000554872 ATP8A2Q9NTI2 1148 aa19.39■□□□□ 0.69
CCDC88C-209ENST00000554872 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.39■□□□□ 0.69
CCDC88C-209ENST00000554872 ZBTB21Q9ULJ3 1066 aa19.39■□□□□ 0.69
CCDC88C-209ENST00000554872 GADL1Q6ZQY3 521 aa19.38■□□□□ 0.69
CCDC88C-209ENST00000554872 CCDC84Q86UT8 332 aaPredicted RBP19.38■□□□□ 0.69
CCDC88C-209ENST00000554872 LCORLQ8N3X6 602 aa19.38■□□□□ 0.69
CCDC88C-209ENST00000554872 KBTBD3Q8NAB2 608 aa19.38■□□□□ 0.69
CCDC88C-209ENST00000554872 DCP1AQ9NPI6 582 aaPredicted RBP19.38■□□□□ 0.69
CCDC88C-209ENST00000554872 PNMA3Q9UL41 463 aa19.38■□□□□ 0.69
CCDC88C-209ENST00000554872 BACE1P56817 501 aa19.37■□□□□ 0.69
CCDC88C-209ENST00000554872 JAG1P78504 1218 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms