RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 SLC45A1Q9Y2W3 748 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 LOC285556D6RIA3 1793 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 SEMA3EO15041 775 aa14.02□□□□□ -0.17
VPS33B-204ENST00000554660 CIAO1O76071 339 aa14.02□□□□□ -0.17
VPS33B-204ENST00000554660 BTDP43251 543 aa14.02□□□□□ -0.17
VPS33B-204ENST00000554660 CCDC102BQ68D86 513 aa14.02□□□□□ -0.17
VPS33B-204ENST00000554660 SLC17A8Q8NDX2 589 aa14.02□□□□□ -0.17
VPS33B-204ENST00000554660 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.02□□□□□ -0.17
VPS33B-204ENST00000554660 BCL11AQ9H165 835 aa14.02□□□□□ -0.17
VPS33B-204ENST00000554660 ABCF2Q9UG63 623 aa14.02□□□□□ -0.17
VPS33B-204ENST00000554660 MROH7-TTC4A0A0A0MT08 1334 aa14.01□□□□□ -0.17
VPS33B-204ENST00000554660 A0A1W2PPC1 479 aa14.01□□□□□ -0.17
VPS33B-204ENST00000554660 DLL1O00548 723 aa14.01□□□□□ -0.17
VPS33B-204ENST00000554660 CTNND1O60716 968 aaKnown RBP14.01□□□□□ -0.17
VPS33B-204ENST00000554660 UBTFL1P0CB47 393 aaPredicted RBP14.01□□□□□ -0.17
VPS33B-204ENST00000554660 RARSP54136 660 aaKnown RBP14.01□□□□□ -0.17
VPS33B-204ENST00000554660 C7orf61Q8IZ16 206 aa14.01□□□□□ -0.17
VPS33B-204ENST00000554660 COA7Q96BR5 231 aa14.01□□□□□ -0.17
VPS33B-204ENST00000554660 CRISPLD2Q9H0B8 497 aa14.01□□□□□ -0.17
VPS33B-204ENST00000554660 MAP3K10Q02779 954 aa14□□□□□ -0.17
VPS33B-204ENST00000554660 TRIM32Q13049 653 aa14□□□□□ -0.17
VPS33B-204ENST00000554660 FAM110CQ1W6H9 321 aa14□□□□□ -0.17
VPS33B-204ENST00000554660 ZGPATQ8N5A5 531 aaKnown RBP14□□□□□ -0.17
VPS33B-204ENST00000554660 FBXO3Q9UK99 471 aa14□□□□□ -0.17
VPS33B-204ENST00000554660 PNMA3Q9UL41 463 aa14□□□□□ -0.17
VPS33B-204ENST00000554660 ZMYND8Q9ULU4 1186 aaPredicted RBP14□□□□□ -0.17
VPS33B-204ENST00000554660 DDX60LQ5H9U9 1706 aaKnown RBP14□□□□□ -0.17
VPS33B-204ENST00000554660 ATAD5Q96QE3 1844 aa13.99□□□□□ -0.17
VPS33B-204ENST00000554660 BCAR3O75815 825 aa13.99□□□□□ -0.17
VPS33B-204ENST00000554660 IL15P40933 162 aaPredicted RBP13.99□□□□□ -0.17
VPS33B-204ENST00000554660 NECAB2Q7Z6G3 386 aa13.99□□□□□ -0.17
VPS33B-204ENST00000554660 ZNF384Q8TF68 577 aa13.99□□□□□ -0.17
VPS33B-204ENST00000554660 SMC4Q9NTJ3 1288 aa13.99□□□□□ -0.17
VPS33B-204ENST00000554660 HMGCRP04035 888 aa13.98□□□□□ -0.17
VPS33B-204ENST00000554660 HMGCS2P54868 508 aa13.98□□□□□ -0.17
VPS33B-204ENST00000554660 RHBDL3P58872 404 aa13.98□□□□□ -0.17
VPS33B-204ENST00000554660 MECOMQ03112 1051 aa13.98□□□□□ -0.17
VPS33B-204ENST00000554660 SPP2Q13103 211 aa13.98□□□□□ -0.17
VPS33B-204ENST00000554660 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.98□□□□□ -0.17
VPS33B-204ENST00000554660 PDS5AQ29RF7 1337 aaKnown RBP13.97□□□□□ -0.17
VPS33B-204ENST00000554660 SYN1P17600 705 aa13.97□□□□□ -0.17
VPS33B-204ENST00000554660 TIMM10P62072 90 aa13.97□□□□□ -0.17
VPS33B-204ENST00000554660 PI16Q6UXB8 463 aa13.97□□□□□ -0.17
VPS33B-204ENST00000554660 SLF2Q8IX21 1173 aa13.97□□□□□ -0.17
VPS33B-204ENST00000554660 PROCA1Q8NCQ7 364 aaPredicted RBP13.97□□□□□ -0.17
VPS33B-204ENST00000554660 FAM163AQ96GL9 167 aaPredicted RBP13.97□□□□□ -0.17
VPS33B-204ENST00000554660 GDF15Q99988 308 aa13.97□□□□□ -0.17
VPS33B-204ENST00000554660 PLXNB2O15031 1838 aa13.97□□□□□ -0.17
VPS33B-204ENST00000554660 DOCK3Q8IZD9 2030 aa13.97□□□□□ -0.17
VPS33B-204ENST00000554660 GPR75-ASB3A0A0A6YYF3 556 aa13.96□□□□□ -0.17
VPS33B-204ENST00000554660 A0A1B0GUL7 405 aa13.96□□□□□ -0.17
VPS33B-204ENST00000554660 RRP1BQ14684 758 aaKnown RBP13.96□□□□□ -0.17
VPS33B-204ENST00000554660 ALDH1L2Q3SY69 923 aa13.96□□□□□ -0.17
VPS33B-204ENST00000554660 Q7L0L9 218 aa13.96□□□□□ -0.17
VPS33B-204ENST00000554660 ZNF280CQ8ND82 737 aa13.96□□□□□ -0.17
VPS33B-204ENST00000554660 TRIB2Q92519 343 aa13.96□□□□□ -0.17
VPS33B-204ENST00000554660 MEIS3Q99687 375 aa13.96□□□□□ -0.17
VPS33B-204ENST00000554660 ASCC2Q9H1I8 757 aaPredicted RBP13.96□□□□□ -0.17
VPS33B-204ENST00000554660 COPRSQ9NQ92 184 aa13.96□□□□□ -0.17
VPS33B-204ENST00000554660 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.96□□□□□ -0.17
VPS33B-204ENST00000554660 A0A0C4DFX4 3053 aa13.96□□□□□ -0.18
VPS33B-204ENST00000554660 SIPA1L1O43166 1804 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 COL2A1P02458 1487 aaPredicted RBP13.95□□□□□ -0.18
VPS33B-204ENST00000554660 ZBTB22O15209 634 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 TBC1D12O60347 775 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 PEX10O60683 326 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 GCLCP48506 637 aaPredicted RBP13.95□□□□□ -0.18
VPS33B-204ENST00000554660 MNX1P50219 401 aaPredicted RBP13.95□□□□□ -0.18
VPS33B-204ENST00000554660 TFCP2Q12800 502 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 NBR1Q14596 966 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 SPTY2D1Q68D10 685 aaPredicted RBP13.95□□□□□ -0.18
VPS33B-204ENST00000554660 ANKLE1Q8NAG6 615 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 XAGE2Q96GT9 111 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 NBPF3Q9H094 633 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 OSBPL5Q9H0X9 879 aaPredicted RBP13.95□□□□□ -0.18
VPS33B-204ENST00000554660 HMX1Q9NP08 348 aaPredicted RBP13.95□□□□□ -0.18
VPS33B-204ENST00000554660 GJD2Q9UKL4 321 aa13.95□□□□□ -0.18
VPS33B-204ENST00000554660 RPTORQ8N122 1335 aa13.94□□□□□ -0.18
VPS33B-204ENST00000554660 CAPN2P17655 700 aa13.94□□□□□ -0.18
VPS33B-204ENST00000554660 BMP8BP34820 402 aa13.94□□□□□ -0.18
VPS33B-204ENST00000554660 MAGEA10P43363 369 aaPredicted RBP13.94□□□□□ -0.18
VPS33B-204ENST00000554660 MTMR2Q13614 643 aa13.94□□□□□ -0.18
VPS33B-204ENST00000554660 MVPQ14764 893 aaKnown RBP13.94□□□□□ -0.18
VPS33B-204ENST00000554660 TBC1D9Q6ZT07 1266 aa13.94□□□□□ -0.18
VPS33B-204ENST00000554660 DEFB123Q8N688 67 aa13.94□□□□□ -0.18
VPS33B-204ENST00000554660 C11orf49Q9H6J7 331 aa13.94□□□□□ -0.18
VPS33B-204ENST00000554660 HMG20BQ9P0W2 317 aa13.94□□□□□ -0.18
VPS33B-204ENST00000554660 DAXXQ9UER7 740 aaPredicted RBP13.94□□□□□ -0.18
VPS33B-204ENST00000554660 NOB1Q9ULX3 412 aaKnown RBP13.94□□□□□ -0.18
VPS33B-204ENST00000554660 PFASO15067 1338 aa13.93□□□□□ -0.18
VPS33B-204ENST00000554660 USP17L5A8MUK1 530 aa13.93□□□□□ -0.18
VPS33B-204ENST00000554660 CYP2B6P20813 491 aa13.93□□□□□ -0.18
VPS33B-204ENST00000554660 CAP2P40123 477 aa13.93□□□□□ -0.18
VPS33B-204ENST00000554660 PABPC4Q13310 644 aaKnown RBP eCLIP13.93□□□□□ -0.18
VPS33B-204ENST00000554660 NSUN4Q96CB9 384 aaKnown RBP13.93□□□□□ -0.18
VPS33B-204ENST00000554660 RWDD1Q9H446 243 aaPredicted RBP13.93□□□□□ -0.18
VPS33B-204ENST00000554660 MAST2Q6P0Q8 1798 aa13.93□□□□□ -0.18
VPS33B-204ENST00000554660 SRGAP3O43295 1099 aa13.92□□□□□ -0.18
VPS33B-204ENST00000554660 NPM3O75607 178 aaKnown RBP13.92□□□□□ -0.18
VPS33B-204ENST00000554660 PRKAR2AP13861 404 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms