RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 RBM17Q96I25 401 aaKnown RBP13.58□□□□□ -0.23
SHMT2-212ENST00000554467 MYH2Q9UKX2 1941 aa13.58□□□□□ -0.24
SHMT2-212ENST00000554467 VGLL3A8MV65 326 aa13.58□□□□□ -0.24
SHMT2-212ENST00000554467 SEMA3EO15041 775 aa13.58□□□□□ -0.24
SHMT2-212ENST00000554467 LDHBP07195 334 aaKnown RBP13.58□□□□□ -0.24
SHMT2-212ENST00000554467 FBXO18Q8NFZ0 1043 aa13.58□□□□□ -0.24
SHMT2-212ENST00000554467 DCP1AQ9NPI6 582 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-212ENST00000554467 WDR19Q8NEZ3 1342 aa13.58□□□□□ -0.24
SHMT2-212ENST00000554467 ZNF219Q9P2Y4 722 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-212ENST00000554467 TNKSO95271 1327 aa13.58□□□□□ -0.24
SHMT2-212ENST00000554467 ERICH2A1L162 156 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 SH3RF3Q8TEJ3 882 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-212ENST00000554467 MCM9Q9NXL9 1143 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 GGA1Q9UJY5 639 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 LEMD3Q9Y2U8 911 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 CLIC4Q9Y696 253 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 IARSP41252 1262 aaKnown RBP13.57□□□□□ -0.24
SHMT2-212ENST00000554467 ME1P48163 572 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 NTRK3Q16288 839 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 ZNF804AQ7Z570 1209 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 USP25Q9UHP3 1055 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 ELP1O95163 1332 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 MMP10P09238 476 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 PDIA4P13667 645 aaKnown RBP13.57□□□□□ -0.24
SHMT2-212ENST00000554467 SART3Q15020 963 aaKnown RBP13.57□□□□□ -0.24
SHMT2-212ENST00000554467 SYNE3Q6ZMZ3 975 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 SGMS1Q86VZ5 419 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 DYNLL2Q96FJ2 89 aa13.57□□□□□ -0.24
SHMT2-212ENST00000554467 CRNKL1Q9BZJ0 848 aaKnown RBP13.57□□□□□ -0.24
SHMT2-212ENST00000554467 SAP30BPQ9UHR5 308 aaKnown RBP13.57□□□□□ -0.24
SHMT2-212ENST00000554467 TDRD7Q8NHU6 1098 aaKnown RBP13.56□□□□□ -0.24
SHMT2-212ENST00000554467 PIBF1Q8WXW3 757 aa13.56□□□□□ -0.24
SHMT2-212ENST00000554467 ESR2Q92731 530 aa13.56□□□□□ -0.24
SHMT2-212ENST00000554467 RNF41Q9H4P4 317 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-212ENST00000554467 CD209Q9NNX6 404 aa13.56□□□□□ -0.24
SHMT2-212ENST00000554467 CFAP45Q9UL16 551 aa13.56□□□□□ -0.24
SHMT2-212ENST00000554467 A0A087WWV3 80 aa13.56□□□□□ -0.24
SHMT2-212ENST00000554467 F8W031 263 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-212ENST00000554467 LIFRP42702 1097 aa13.56□□□□□ -0.24
SHMT2-212ENST00000554467 KIAA2012Q0VF49 1180 aa13.56□□□□□ -0.24
SHMT2-212ENST00000554467 ENAHQ8N8S7 591 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-212ENST00000554467 ERCC4Q92889 916 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-212ENST00000554467 RTN1Q16799 776 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 ZNF772Q68DY9 489 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-212ENST00000554467 KRT40Q6A162 431 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 ZNF654Q8IZM8 581 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 TBC1D16Q8TBP0 767 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 MXD3Q9BW11 206 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 BRIP1Q9BX63 1249 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 NUP62CLQ9H1M0 184 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 GOLPH3LQ9H4A5 285 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 KCNJ14Q9UNX9 436 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 MTMR7Q9Y216 660 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 USP5P45974 858 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 TGFBRAP1Q8WUH2 860 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 KIF23Q02241 960 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-212ENST00000554467 GNL2Q13823 731 aaKnown RBP13.55□□□□□ -0.24
SHMT2-212ENST00000554467 CPLX2Q6PUV4 134 aaKnown RBP13.55□□□□□ -0.24
SHMT2-212ENST00000554467 MAPKAPK5Q8IW41 473 aa13.55□□□□□ -0.24
SHMT2-212ENST00000554467 RXRBP28702 533 aa13.54□□□□□ -0.24
SHMT2-212ENST00000554467 CCAR1Q8IX12 1150 aaKnown RBP13.54□□□□□ -0.24
SHMT2-212ENST00000554467 SLC44A5Q8NCS7 719 aa13.54□□□□□ -0.24
SHMT2-212ENST00000554467 WDR66Q8TBY9 1149 aa13.54□□□□□ -0.24
SHMT2-212ENST00000554467 ZSCAN10Q96SZ4 725 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-212ENST00000554467 PPEF1O14829 653 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-212ENST00000554467 SSRP1Q08945 709 aaKnown RBP13.54□□□□□ -0.24
SHMT2-212ENST00000554467 DOK7Q18PE1 504 aa13.54□□□□□ -0.24
SHMT2-212ENST00000554467 AKT1S1Q96B36 256 aa13.54□□□□□ -0.24
SHMT2-212ENST00000554467 TNMDQ9H2S6 317 aa13.54□□□□□ -0.24
SHMT2-212ENST00000554467 U2AF2P26368 475 aaKnown RBP eCLIP13.54□□□□□ -0.244e-8■■□□□ 14.1
SHMT2-212ENST00000554467 MARCKSP29966 332 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-212ENST00000554467 MFSD14BQ5SR56 506 aa13.54□□□□□ -0.24
SHMT2-212ENST00000554467 IFIT1BQ5T764 474 aaKnown RBP13.54□□□□□ -0.24
SHMT2-212ENST00000554467 ZNF396Q96N95 335 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-212ENST00000554467 ANAPC4Q9UJX5 808 aa13.54□□□□□ -0.24
SHMT2-212ENST00000554467 RCOR1Q9UKL0 485 aa13.54□□□□□ -0.24
SHMT2-212ENST00000554467 CDKL5O76039 1030 aa13.53□□□□□ -0.24
SHMT2-212ENST00000554467 GTF2IP78347 998 aa13.53□□□□□ -0.24
SHMT2-212ENST00000554467 NOLC1Q14978 699 aaKnown RBP eCLIP13.53□□□□□ -0.241e-8■■■□□ 15.5
SHMT2-212ENST00000554467 SEC23AQ15436 765 aa13.53□□□□□ -0.24
SHMT2-212ENST00000554467 MYSM1Q5VVJ2 828 aa13.53□□□□□ -0.24
SHMT2-212ENST00000554467 SPTY2D1Q68D10 685 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-212ENST00000554467 FANCBQ8NB91 859 aa13.53□□□□□ -0.24
SHMT2-212ENST00000554467 PRIMPOLQ96LW4 560 aa13.53□□□□□ -0.24
SHMT2-212ENST00000554467 BBOX1O75936 387 aa13.53□□□□□ -0.24
SHMT2-212ENST00000554467 STK38Q15208 465 aa13.53□□□□□ -0.24
SHMT2-212ENST00000554467 SF3A1Q15459 793 aaKnown RBP13.53□□□□□ -0.24
SHMT2-212ENST00000554467 ZNF622Q969S3 477 aaKnown RBP eCLIP13.53□□□□□ -0.24
SHMT2-212ENST00000554467 TIAM2Q8IVF5 1701 aa13.53□□□□□ -0.24
SHMT2-212ENST00000554467 PLEKHA8P1O95397 391 aa13.52□□□□□ -0.24
SHMT2-212ENST00000554467 ATP2B4P23634 1241 aa13.52□□□□□ -0.24
SHMT2-212ENST00000554467 MAP3K11Q16584 847 aa13.52□□□□□ -0.24
SHMT2-212ENST00000554467 PCDHA7Q9UN72 937 aa13.52□□□□□ -0.24
SHMT2-212ENST00000554467 A0A1B0GVL5 298 aa13.52□□□□□ -0.25
SHMT2-212ENST00000554467 ATP2B1P20020 1258 aa13.52□□□□□ -0.25
SHMT2-212ENST00000554467 FSIP1Q8NA03 581 aa13.52□□□□□ -0.25
SHMT2-212ENST00000554467 BTDP43251 543 aa13.52□□□□□ -0.25
SHMT2-212ENST00000554467 NLGN1Q8N2Q7 840 aa13.52□□□□□ -0.25
SHMT2-212ENST00000554467 TSPY2A6NKD2 308 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 HOXA10P31260 410 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms