RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 COL4A3BPQ9Y5P4 624 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 USP16Q9Y5T5 823 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 COL1A1P02452 1464 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-206ENST00000554429 SMPD1P17405 629 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 RRM1P23921 792 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 SETDB1Q15047 1291 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 CC2D1AQ6P1N0 951 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-206ENST00000554429 NOP9Q86U38 636 aaKnown RBP3.29□□□□□ -1.88
PRPF39-206ENST00000554429 SP8Q8IXZ3 490 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 RAVER1Q8IY67 606 aaKnown RBP3.29□□□□□ -1.88
PRPF39-206ENST00000554429 TSR2Q969E8 191 aaKnown RBP3.29□□□□□ -1.88
PRPF39-206ENST00000554429 SLC6A16Q9GZN6 736 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 ZSWIM4Q9H7M6 989 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 ADARB2Q9NS39 739 aaKnown RBP3.29□□□□□ -1.88
PRPF39-206ENST00000554429 SWAP70Q9UH65 585 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 TCEAL9Q9UHQ7 104 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 ATP6V0A2Q9Y487 856 aa3.29□□□□□ -1.88
PRPF39-206ENST00000554429 BBOX1O75936 387 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 S1PR4O95977 384 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 IGHDP01880 384 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 HMOX1P09601 288 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 HOXB7P09629 217 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 TNNT2P45379 298 aaPredicted RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 EIF6P56537 245 aaKnown RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 EIF4A1P60842 406 aaKnown RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 HNRNPUQ00839 825 aaKnown RBP eCLIP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 LONRF1Q17RB8 773 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 TTC39BQ5VTQ0 682 aaPredicted RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 CST9Q5W186 159 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 SMYD5Q6GMV2 418 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 B4GALNT3Q6L9W6 998 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 GIGYF2Q6Y7W6 1299 aaKnown RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 RPAINQ86UA6 219 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 NT5DC4Q86YG4 428 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 NPAS4Q8IUM7 802 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 CCAR1Q8IX12 1150 aaKnown RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 RSPH1Q8WYR4 309 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 DPF2Q92785 391 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 PHACTR3Q96KR7 559 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 CFAP53Q96M91 514 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 RSPH9Q9H1X1 276 aaPredicted RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 SPC25Q9HBM1 224 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 GPRC5DQ9NZD1 345 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 TBC1D2BQ9UPU7 963 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 NUDCQ9Y266 331 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 MRPL42Q9Y6G3 142 aaKnown RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 WNT7AO00755 349 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 KCNQ3O43525 872 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 S100BP04271 92 aaPredicted RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 POLR2AP24928 1970 aaKnown RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 RPS12P25398 132 aaKnown RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 KIAA2012Q0VF49 1180 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 SCN9AQ15858 1988 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 DUSP27Q5VZP5 1158 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 UBN2Q6ZU65 1347 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 FILIP1Q7Z7B0 1213 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 TTC30AQ86WT1 665 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 TATDN2Q93075 761 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 CCDC102AQ96A19 550 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 SCYL1Q96KG9 808 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 SENP7Q9BQF6 1050 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 PNNQ9H307 717 aaKnown RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 IFT57Q9NWB7 429 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 FEZ2Q9UHY8 353 aaPredicted RBP3.28□□□□□ -1.88
PRPF39-206ENST00000554429 TSKSQ9UJT2 592 aa3.28□□□□□ -1.88
PRPF39-206ENST00000554429 PPEF1O14829 653 aaPredicted RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 IPO8O15397 1037 aaKnown RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 SLURP2P0DP57 97 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 PPP2R1AP30153 589 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 PRKAR2BP31323 418 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 LBX1P52954 281 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 TRIM28Q13263 835 aaKnown RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 TTLL12Q14166 644 aaPredicted RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 DHX8Q14562 1220 aaKnown RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 PDIA6Q15084 440 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 HLFQ16534 295 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 C1QTNF12Q5T7M4 302 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 PPP1R42Q7Z4L9 355 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 SAPCD2Q86UD0 394 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 CAPNS2Q96L46 248 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 TRIM34Q9BYJ4 488 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 PCDH12Q9NPG4 1184 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 JADE2Q9NQC1 790 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 ZNF277Q9NRM2 450 aaPredicted RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 ZNRF3Q9ULT6 936 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 NIP7Q9Y221 180 aaKnown RBP eCLIP3.27□□□□□ -1.896e-7■■■■■ 31.5
PRPF39-206ENST00000554429 FAM155AB1AL88 458 aaPredicted RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 NR1I2O75469 434 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 LDHAP00338 332 aaKnown RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 LDHCP07864 332 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 FAM200BP0CF97 657 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 NAT2P11245 290 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 LMOD1P29536 600 aaPredicted RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 SSR1P43307 286 aaKnown RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 MARSP56192 900 aaKnown RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 FKBP1BP68106 108 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 POU5F1Q01860 360 aaKnown RBP3.27□□□□□ -1.89
PRPF39-206ENST00000554429 TNIP1Q15025 636 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 CHST12Q9NRB3 414 aa3.27□□□□□ -1.89
PRPF39-206ENST00000554429 PRKAG2Q9UGJ0 569 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms