RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 CCDC51Q96ER9 411 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 STX10O60499 249 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 ADCY7P51828 1080 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 PLS1Q14651 629 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 B4GALNT4Q76KP1 1039 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 SECISBP2LQ93073 1101 aaKnown RBP12.89□□□□□ -0.35
SYNE2-208ENST00000553289 ZNF274Q96GC6 653 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-208ENST00000553289 NCOA5Q9HCD5 579 aaKnown RBP12.89□□□□□ -0.35
SYNE2-208ENST00000553289 UBAP1LF5GYI3 381 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 LIN9Q5TKA1 542 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 IFT20Q8IY31 132 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 MICALL1Q8N3F8 863 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 SPATA5Q8NB90 893 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 SWAP70Q9UH65 585 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 NDC80O14777 642 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 KDM5AP29375 1690 aaKnown RBP12.88□□□□□ -0.35
SYNE2-208ENST00000553289 RIMBP2O15034 1052 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 SPOPO43791 374 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 ZEB2O60315 1214 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 RAB3IL1Q8TBN0 382 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 SSH3Q8TE77 659 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 UBLCP1Q8WVY7 318 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-208ENST00000553289 CCDC114Q96M63 670 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 MAK16Q9BXY0 300 aaKnown RBP12.88□□□□□ -0.35
SYNE2-208ENST00000553289 LRWD1Q9UFC0 647 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 NCKAP5LQ9HCH0 1330 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 TLDC2A0PJX2 215 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 INF2Q27J81 1249 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 AFAP1L1Q8TED9 768 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 GPCPD1Q9NPB8 672 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 CCDC87Q9NVE4 849 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 BTG4Q9NY30 223 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 FAM169AQ9Y6X4 670 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 SNX16P57768 344 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 ZNF354CQ86Y25 554 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 GTF3C6Q969F1 213 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 FAM212AQ96EL1 285 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 IFT74Q96LB3 600 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 NFE2L3Q9Y4A8 694 aa12.88□□□□□ -0.35
SYNE2-208ENST00000553289 POLD1P28340 1107 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 ERCC5P28715 1186 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-208ENST00000553289 MCTP2Q6DN12 878 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 MYRIPQ8NFW9 859 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 KCNG1Q9UIX4 513 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 UTP11Q9Y3A2 253 aaKnown RBP12.87□□□□□ -0.35
SYNE2-208ENST00000553289 KDRP35968 1356 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 GIGYF1O75420 1035 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-208ENST00000553289 RPGRIP1Q96KN7 1286 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 KCNK9Q9NPC2 374 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 STIM2Q9P246 746 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 SAP30BPQ9UHR5 308 aaKnown RBP12.87□□□□□ -0.35
SYNE2-208ENST00000553289 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.87□□□□□ -0.35
SYNE2-208ENST00000553289 ERBB4Q15303 1308 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 ERVV-2B6SEH9 535 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 E7EWF7 191 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 ADALQ6DHV7 355 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 CCDC25Q86WR0 208 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 SYCE1Q8N0S2 351 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 IPO4Q8TEX9 1081 aaKnown RBP12.87□□□□□ -0.35
SYNE2-208ENST00000553289 TBC1D22AQ8WUA7 517 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 HOOK2Q96ED9 719 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 LGR6Q9HBX8 967 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 MAPK8IP2Q13387 824 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-208ENST00000553289 BIRC3Q13489 604 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 CDC37L1Q7L3B6 337 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 ZBTB21Q9ULJ3 1066 aa12.87□□□□□ -0.35
SYNE2-208ENST00000553289 ARHGEF35A5YM69 484 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 TXKP42681 527 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 MAP3K9P80192 1104 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 RUFY4Q6ZNE9 571 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 KLHDC4Q8TBB5 520 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 CCDC110Q8TBZ0 833 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 SNX29Q8TEQ0 813 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 TRIM7Q9C029 511 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 ARPP21Q9UBL0 812 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-208ENST00000553289 ZNF532Q9HCE3 1301 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 GNA14O95837 355 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 AKNAD1Q5T1N1 836 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 ANAPC4Q9UJX5 808 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 KRT5P13647 590 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 GTF2A1P52655 376 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-208ENST00000553289 MAP7D1Q3KQU3 841 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 TTC31Q49AM3 519 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-208ENST00000553289 DNM3Q9UQ16 869 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 KDM5DQ9BY66 1539 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 NEURL1BA8MQ27 555 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 KRT9P35527 623 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 SLC8A3P57103 927 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 RBM26Q5T8P6 1007 aaKnown RBP12.86□□□□□ -0.35
SYNE2-208ENST00000553289 NT5C3AQ9H0P0 336 aa12.86□□□□□ -0.35
SYNE2-208ENST00000553289 FLOT1O75955 427 aa12.85□□□□□ -0.35
SYNE2-208ENST00000553289 SMAP1Q8IYB5 467 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-208ENST00000553289 ZNF594Q96JF6 807 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-208ENST00000553289 DISP1Q96F81 1524 aa12.85□□□□□ -0.35
SYNE2-208ENST00000553289 GAS8O95995 478 aa12.85□□□□□ -0.35
SYNE2-208ENST00000553289 LACTBP83111 547 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-208ENST00000553289 STRN3Q13033 797 aa12.85□□□□□ -0.35
SYNE2-208ENST00000553289 GPATCH11Q8N954 259 aa12.85□□□□□ -0.35
SYNE2-208ENST00000553289 CCNL1Q9UK58 526 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-208ENST00000553289 RIOK3O14730 519 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms