RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TLL2Q9Y6L7 1015 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 MORC2Q9Y6X9 1032 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-216ENST00000552909 MYH2Q9UKX2 1941 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 RASSF10A6NK89 507 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 GOLGA6L6A8MZA4 724 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 TCP10L2B9ZVM9 353 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 IFIT2P09913 472 aaKnown RBP8.97□□□□□ -0.97
LIMA1-216ENST00000552909 UQCRFS1P1P0C7P4 283 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 CNTNAP1P78357 1384 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 MECOMQ03112 1051 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 GRM1Q13255 1194 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 PRKG1Q13976 671 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 RASA3Q14644 834 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 PDS5AQ29RF7 1337 aaKnown RBP8.97□□□□□ -0.97
LIMA1-216ENST00000552909 CCDC183Q5T5S1 534 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 TTC22Q5TAA0 569 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 CYP4F22Q6NT55 531 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 HHIPL2Q6UWX4 724 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 APOBEC3FQ8IUX4 373 aaKnown RBP8.97□□□□□ -0.97
LIMA1-216ENST00000552909 GBA2Q9HCG7 927 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-216ENST00000552909 PYCARDQ9ULZ3 195 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 HUNKP57058 714 aa8.96□□□□□ -0.97
LIMA1-216ENST00000552909 NBPF12Q5TAG4 269 aaPredicted RBP8.96□□□□□ -0.97
LIMA1-216ENST00000552909 ZNF512BQ96KM6 892 aaPredicted RBP8.96□□□□□ -0.97
LIMA1-216ENST00000552909 TMEM39BQ9GZU3 492 aa8.96□□□□□ -0.97
LIMA1-216ENST00000552909 OSBPL3Q9H4L5 887 aa8.96□□□□□ -0.97
LIMA1-216ENST00000552909 CALCOCO1Q9P1Z2 691 aa8.96□□□□□ -0.97
LIMA1-216ENST00000552909 MAST3O60307 1309 aa8.96□□□□□ -0.98
LIMA1-216ENST00000552909 REC8O95072 547 aa8.96□□□□□ -0.98
LIMA1-216ENST00000552909 CDC42EP5Q6NZY7 148 aa8.96□□□□□ -0.98
LIMA1-216ENST00000552909 PAXIP1Q6ZW49 1069 aaPredicted RBP8.96□□□□□ -0.98
LIMA1-216ENST00000552909 DZIP1Q86YF9 867 aaKnown RBP8.96□□□□□ -0.98
LIMA1-216ENST00000552909 KRT222Q8N1A0 295 aa8.96□□□□□ -0.98
LIMA1-216ENST00000552909 C2orf69Q8N8R5 385 aa8.96□□□□□ -0.98
LIMA1-216ENST00000552909 NSUN4Q96CB9 384 aaKnown RBP8.96□□□□□ -0.98
LIMA1-216ENST00000552909 KCNF1Q9H3M0 494 aa8.96□□□□□ -0.98
LIMA1-216ENST00000552909 PIH1D3Q9NQM4 214 aaKnown RBP8.96□□□□□ -0.98
LIMA1-216ENST00000552909 STAP2Q9UGK3 403 aa8.96□□□□□ -0.98
LIMA1-216ENST00000552909 SALL3Q9BXA9 1300 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 SMTNL1A8MU46 457 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 UBE2Q2LH0YL09 131 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 GADD45BO75293 160 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-216ENST00000552909 MCM2P49736 904 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 PLCB2Q00722 1185 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 NFIAQ12857 509 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 KIF18AQ8NI77 898 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 EDC3Q96F86 508 aaKnown RBP8.95□□□□□ -0.98
LIMA1-216ENST00000552909 TMX3Q96JJ7 454 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 TEPSINQ96N21 525 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 TSPYL1Q9H0U9 437 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 RAI14Q9P0K7 980 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 LRP2BPQ9P2M1 347 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 SSC5DA1L4H1 1573 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 GAKO14976 1311 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 AOC2O75106 756 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 SDSP20132 328 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 FAM193AP78312 1265 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 SPTY2D1Q68D10 685 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-216ENST00000552909 ADGRA1Q86SQ6 560 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 ZFPM1Q8IX07 1006 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 JMYQ8N9B5 988 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 CAPNS2Q96L46 248 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 ZIC5Q96T25 663 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 USP40Q9NVE5 1235 aa8.95□□□□□ -0.98
LIMA1-216ENST00000552909 WDR33Q9C0J8 1336 aaKnown RBP8.94□□□□□ -0.98
LIMA1-216ENST00000552909 TRIM6-TRIM34B2RNG4 842 aa8.94□□□□□ -0.98
LIMA1-216ENST00000552909 TULP2O00295 520 aa8.94□□□□□ -0.98
LIMA1-216ENST00000552909 TCP10Q12799 353 aa8.94□□□□□ -0.98
LIMA1-216ENST00000552909 FAM163AQ96GL9 167 aaPredicted RBP8.94□□□□□ -0.98
LIMA1-216ENST00000552909 BOLA2Q9H3K6 86 aa8.94□□□□□ -0.98
LIMA1-216ENST00000552909 MROH7-TTC4A0A0A0MT08 1334 aa8.94□□□□□ -0.98
LIMA1-216ENST00000552909 MAP4K4O95819 1239 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-216ENST00000552909 BTDP43251 543 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 NEK4P51957 841 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 MAPK8IP2Q13387 824 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-216ENST00000552909 TTLL12Q14166 644 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-216ENST00000552909 CREBRFQ8IUR6 639 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 RILPL2Q969X0 211 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 INTS4Q96HW7 963 aaKnown RBP8.93□□□□□ -0.98
LIMA1-216ENST00000552909 GDPD2Q9HCC8 539 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 ECHDC1Q9NTX5 307 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 FAM198AQ9UFP1 575 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 GPR75-ASB3A0A0A6YYF3 556 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 IDH1O75874 414 aaKnown RBP8.93□□□□□ -0.98
LIMA1-216ENST00000552909 SLURP2P0DP57 97 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 RHBDL3P58872 404 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 IRX3P78415 501 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-216ENST00000552909 CUL4AQ13619 759 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 TNFAIP1Q13829 316 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 SPC24Q8NBT2 197 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 GPATCH3Q96I76 525 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 DDX4Q9NQI0 724 aaKnown RBP8.93□□□□□ -0.98
LIMA1-216ENST00000552909 ANGEL1Q9UNK9 670 aaKnown RBP8.93□□□□□ -0.98
LIMA1-216ENST00000552909 PAXBP1Q9Y5B6 917 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 PPP2R3BQ9Y5P8 575 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 CENPFP49454 3210 aa8.93□□□□□ -0.98
LIMA1-216ENST00000552909 TTC41PQ6P2S7 1318 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 ERICH4A6NGS2 130 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 FAM155AB1AL88 458 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 GOLIM4O00461 696 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms