RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SH2B2O14492 632 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 PPP6R2O75170 966 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 TBC1D8O95759 1140 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 TOP1P11387 765 aaKnown RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 MCAMP43121 646 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 METAP2P50579 478 aaKnown RBP eCLIP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 ADKP55263 362 aaKnown RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 MDM2Q00987 491 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 ZNF827Q17R98 1081 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 APOA5Q6Q788 366 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 KRBA2Q6ZNG9 492 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 RALYLQ86SE5 291 aaKnown RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 MICU3Q86XE3 530 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 TC2NQ8N9U0 490 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 CCDC191Q8NCU4 936 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 RGS22Q8NE09 1264 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 ATRIPQ8WXE1 791 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 IRX2Q9BZI1 471 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 UBXN6Q9BZV1 441 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 ANGEL1Q9UNK9 670 aaKnown RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 PKD1L3Q7Z443 1732 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 CCDC66A2RUB6 948 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 B4E1Z4 1266 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 POLR3GO15318 223 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 GUCY1A2P33402 732 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 TOB1P50616 345 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 ST5P78524 1137 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 MAP3K9P80192 1104 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 MTF1Q14872 753 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 CCDC158Q5M9N0 1113 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 TRMT44Q8IYL2 757 aaKnown RBP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 GRAMD1CQ8IYS0 662 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 STK11IPQ8N1F8 1099 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 KIFC2Q96AC6 838 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.23□□□□□ -1.41
LIMA1-212ENST00000552491 C19orf44Q9H6X5 657 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 KCNH3Q9ULD8 1083 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 UBN2Q6ZU65 1347 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 RIC1Q4ADV7 1423 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 C1orf167Q5SNV9 1468 aa6.23□□□□□ -1.41
LIMA1-212ENST00000552491 EFCAB8A8MWE9 144 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 ZFYP08048 801 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 ZNF18P17022 549 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 ADD2P35612 726 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 HNRNPH2P55795 449 aaKnown RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 CCDC57Q2TAC2 916 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 LRRFIP1Q32MZ4 808 aaKnown RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 TMCO3Q6UWJ1 677 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 CNNM3Q8NE01 707 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 MNS1Q8NEH6 495 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 IGDCC4Q8TDY8 1250 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 FAM89AQ96GI7 184 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 DESI2Q9BSY9 194 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 SRRTQ9BXP5 876 aaKnown RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 ATG3Q9NT62 314 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 MAN1B1Q9UKM7 699 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 KCPQ6ZWJ8 1503 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 BTBD18B2RXH4 712 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 ARHGAP6O43182 974 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 CBFA2T2O43439 604 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 CAPN2P17655 700 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 GNG11P61952 73 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 CCDC102BQ68D86 513 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 CC2D1AQ6P1N0 951 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 POTEEQ6S8J3 1075 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 USP49Q70CQ1 688 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 RSRC2Q7L4I2 434 aaKnown RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 PDILTQ8N807 584 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 NEK11Q8NG66 645 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 ZBTB9Q96C00 473 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 MS4A4AQ96JQ5 239 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 BAG1Q99933 345 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 ISCA1Q9BUE6 129 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 MRPL44Q9H9J2 332 aaKnown RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 LY9Q9HBG7 655 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 PIH1D3Q9NQM4 214 aaKnown RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 SAMSN1Q9NSI8 373 aaKnown RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 MRFAP1Q9Y605 127 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 WDR19Q8NEZ3 1342 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 MST1RQ04912 1400 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 UBR2Q8IWV8 1755 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 MYO1BO43795 1136 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 CUTAO60888 179 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 GTF2E1P29083 439 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 GYS2P54840 703 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 KARSQ15046 597 aaKnown RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 TEX35Q5T0J7 233 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 SLC9C2Q5TAH2 1124 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 SMARCE1Q969G3 411 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 DHX58Q96C10 678 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 CCDC34Q96HJ3 373 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 TRERF1Q96PN7 1200 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 TEX13AQ9BXU3 409 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 ARGLU1Q9NWB6 273 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-212ENST00000552491 SERTAD1Q9UHV2 236 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 KCNJ14Q9UNX9 436 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 NFE2L3Q9Y4A8 694 aa6.22□□□□□ -1.41
LIMA1-212ENST00000552491 TEX33O43247 280 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms