RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	EIF1AY	O14602	144 aa	Known RBP	5.54	□□□□□ -1.52
USP44-208	ENST00000552440	PRNP	P04156	253 aa		5.54	□□□□□ -1.52
USP44-208	ENST00000552440	RHBDL3	P58872	404 aa		5.54	□□□□□ -1.52
USP44-208	ENST00000552440	GSTM4	Q03013	218 aa		5.54	□□□□□ -1.52
USP44-208	ENST00000552440	NFKBIB	Q15653	356 aa		5.54	□□□□□ -1.52
USP44-208	ENST00000552440	VSIG10L	Q86VR7	867 aa		5.54	□□□□□ -1.52
USP44-208	ENST00000552440	ENPP3	O14638	875 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	EREG	O14944	169 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	DNAJC6	O75061	913 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	ESRRA	P11474	423 aa	Predicted RBP	5.53	□□□□□ -1.52
USP44-208	ENST00000552440	XRCC5	P13010	732 aa	Known RBP	5.53	□□□□□ -1.52
USP44-208	ENST00000552440	SOX4	Q06945	474 aa	Predicted RBP	5.53	□□□□□ -1.52
USP44-208	ENST00000552440	NFE2L2	Q16236	605 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	SGO2	Q562F6	1265 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	AGBL5	Q8NDL9	886 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	SPC25	Q9HBM1	224 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	BSDC1	Q9NW68	430 aa	Predicted RBP	5.53	□□□□□ -1.52
USP44-208	ENST00000552440	DDX41	Q9UJV9	622 aa	Known RBP	5.53	□□□□□ -1.52
USP44-208	ENST00000552440	ZEB1	P37275	1124 aa	Predicted RBP	5.53	□□□□□ -1.52
USP44-208	ENST00000552440	RACK1	P63244	317 aa	Known RBP	5.53	□□□□□ -1.52
USP44-208	ENST00000552440	BIRC2	Q13490	618 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	FMNL3	Q8IVF7	1028 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	FBXL6	Q8N531	539 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	EZH1	Q92800	747 aa	Predicted RBP	5.53	□□□□□ -1.52
USP44-208	ENST00000552440	DNAJC25	Q9H1X3	360 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	CLEC4M	Q9H2X3	399 aa	Predicted RBP	5.53	□□□□□ -1.52
USP44-208	ENST00000552440	ZFYVE28	Q9HCC9	887 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	ADGRE2	Q9UHX3	823 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	PNMA2	Q9UL42	364 aa		5.53	□□□□□ -1.52
USP44-208	ENST00000552440	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	5.52	□□□□□ -1.53
USP44-208	ENST00000552440	CYP26A1	O43174	497 aa		5.52	□□□□□ -1.53
USP44-208	ENST00000552440	STK10	O94804	968 aa	Known RBP	5.52	□□□□□ -1.53
USP44-208	ENST00000552440	ACPP	P15309	386 aa		5.52	□□□□□ -1.53
USP44-208	ENST00000552440	FOXD4	Q12950	439 aa	Predicted RBP	5.52	□□□□□ -1.53
USP44-208	ENST00000552440	ZNF394	Q53GI3	561 aa		5.52	□□□□□ -1.53
USP44-208	ENST00000552440	ASIC4	Q96FT7	647 aa		5.52	□□□□□ -1.53
USP44-208	ENST00000552440	MRFAP1L1	Q96HT8	127 aa		5.52	□□□□□ -1.53
USP44-208	ENST00000552440	RPS6KC1	Q96S38	1066 aa		5.52	□□□□□ -1.53
USP44-208	ENST00000552440	SPG7	Q9UQ90	795 aa		5.52	□□□□□ -1.53
USP44-208	ENST00000552440	SYNGAP1	Q96PV0	1343 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	PRC1	O43663	620 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	F13B	P05160	661 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	JUNB	P17275	347 aa	Predicted RBP	5.51	□□□□□ -1.53
USP44-208	ENST00000552440	PTPN12	Q05209	780 aa	Known RBP	5.51	□□□□□ -1.53
USP44-208	ENST00000552440	CLEC4G	Q6UXB4	293 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	ZAR1	Q86SH2	424 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	KRTAP19-1	Q8IUB9	90 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	ZNF654	Q8IZM8	581 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	FAM9B	Q8IZU0	186 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	HHIP	Q96QV1	700 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	INPP5F	Q9Y2H2	1132 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	PCDHGB7	Q9Y5F8	929 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440		A6NHS1	94 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	TRPA1	O75762	1119 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	EIF4B	P23588	611 aa	Known RBP	5.51	□□□□□ -1.53
USP44-208	ENST00000552440	PCDH1	Q08174	1060 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	MSMP	Q1L6U9	139 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	C2CD4A	Q8NCU7	369 aa	Predicted RBP	5.51	□□□□□ -1.53
USP44-208	ENST00000552440	PNISR	Q8TF01	805 aa	Known RBP	5.51	□□□□□ -1.53
USP44-208	ENST00000552440	JDP2	Q8WYK2	163 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	TBC1D32	Q96NH3	1257 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440	RAD18	Q9NS91	495 aa		5.51	□□□□□ -1.53
USP44-208	ENST00000552440		A0A096LPE4	126 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440		A0A1W2PPZ6	126 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	CPNE3	O75131	537 aa	Known RBP	5.5	□□□□□ -1.53
USP44-208	ENST00000552440	POU4F3	Q15319	338 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	5.5	□□□□□ -1.53
USP44-208	ENST00000552440	C11orf96	Q7Z7L8	435 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	USP48	Q86UV5	1035 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	MCF2L2	Q86YR7	1114 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	CCNJL	Q8IV13	435 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	GALNT12	Q8IXK2	581 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	FBLIM1	Q8WUP2	373 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	CORO1B	Q9BR76	489 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	GNL3L	Q9NVN8	582 aa	Known RBP	5.5	□□□□□ -1.53
USP44-208	ENST00000552440	GEMIN8	Q9NWZ8	242 aa	Known RBP	5.5	□□□□□ -1.53
USP44-208	ENST00000552440	CCDC39	Q9UFE4	941 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	PRKAB1	Q9Y478	270 aa		5.5	□□□□□ -1.53
USP44-208	ENST00000552440	USP31	Q70CQ4	1352 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	ADAMTS4	O75173	837 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	PDGFRB	P09619	1106 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	HS2ST1	Q7LGA3	356 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	TP53INP2	Q8IXH6	220 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	STK11IP	Q8N1F8	1099 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	OSBPL7	Q9BZF2	842 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	C12orf49	Q9H741	205 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	LIN7B	Q9HAP6	207 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	RPS6KL1	Q9Y6S9	549 aa		5.49	□□□□□ -1.53
USP44-208	ENST00000552440	PPP1R12A	O14974	1030 aa	Predicted RBP	5.48	□□□□□ -1.53
USP44-208	ENST00000552440	FGR	P09769	529 aa		5.48	□□□□□ -1.53
USP44-208	ENST00000552440	ADH5	P11766	374 aa		5.48	□□□□□ -1.53
USP44-208	ENST00000552440	AMPD3	Q01432	767 aa		5.48	□□□□□ -1.53
USP44-208	ENST00000552440	AP3B2	Q13367	1082 aa		5.48	□□□□□ -1.53
USP44-208	ENST00000552440	PEAR1	Q5VY43	1037 aa	Predicted RBP	5.48	□□□□□ -1.53
USP44-208	ENST00000552440	USPL1	Q5W0Q7	1092 aa		5.48	□□□□□ -1.53
USP44-208	ENST00000552440	PI16	Q6UXB8	463 aa		5.48	□□□□□ -1.53
USP44-208	ENST00000552440	KRBA2	Q6ZNG9	492 aa		5.48	□□□□□ -1.53
USP44-208	ENST00000552440	CNPY4	Q8N129	248 aa		5.48	□□□□□ -1.53
USP44-208	ENST00000552440	TYW1	Q9NV66	732 aa	Known RBP	5.48	□□□□□ -1.53
USP44-208	ENST00000552440	FOXD3	Q9UJU5	478 aa	Predicted RBP	5.48	□□□□□ -1.53

Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms