RNA–Protein interactions for RNA: ENST00000550379.1

RNF41-208, Transcript of ring finger protein 41, human

TSL 3

Gene RNF41, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF41-208	ENST00000550379	FBXW7	Q969H0	707 aa		9.11	□□□□□ -0.95
RNF41-208	ENST00000550379	TMEM87B	Q96K49	555 aa		9.11	□□□□□ -0.95
RNF41-208	ENST00000550379	TEPSIN	Q96N21	525 aa		9.11	□□□□□ -0.95
RNF41-208	ENST00000550379	NEK1	Q96PY6	1258 aa		9.11	□□□□□ -0.95
RNF41-208	ENST00000550379	TDRD3	Q9H7E2	651 aa	Known RBP	9.11	□□□□□ -0.95
RNF41-208	ENST00000550379	MCM9	Q9NXL9	1143 aa		9.11	□□□□□ -0.95
RNF41-208	ENST00000550379	SERPINB13	Q9UIV8	391 aa		9.11	□□□□□ -0.95
RNF41-208	ENST00000550379	POLR2A	P24928	1970 aa	Known RBP	9.11	□□□□□ -0.95
RNF41-208	ENST00000550379	GREB1L	Q9C091	1923 aa	Predicted RBP	9.11	□□□□□ -0.95
RNF41-208	ENST00000550379		F8W031	263 aa	Predicted RBP	9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	HLA-DOA	P06340	250 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	VEGFA	P15692	232 aa	Predicted RBP	9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	MCM5	P33992	734 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	HIRA	P54198	1017 aa	Predicted RBP	9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	NFIA	Q12857	509 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	TRDN	Q13061	729 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	PPP2R5B	Q15173	497 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	ANKRD1	Q15327	319 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	NBPF9	Q3BBW0	867 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	STOX1	Q6ZVD7	989 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	SGMS1	Q86VZ5	419 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	CHMP4C	Q96CF2	233 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	TAF1D	Q9H5J8	278 aa	Predicted RBP	9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	GJA3	Q9Y6H8	435 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	SIPA1L1	O43166	1804 aa		9.1	□□□□□ -0.95
RNF41-208	ENST00000550379	EGFR	P00533	1210 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	RPS6KB1	P23443	525 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	EPHX2	P34913	555 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	PLCD1	P51178	756 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	RBM5	P52756	815 aa	Known RBP eCLIP	9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	ADCK5	Q3MIX3	580 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	BLOC1S2	Q6QNY1	142 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	SH3BP5L	Q7L8J4	393 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	SAMD7	Q7Z3H4	446 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	DGKH	Q86XP1	1220 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	TBC1D10C	Q8IV04	446 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	RGS22	Q8NE09	1264 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	ESR2	Q92731	530 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	MAP3K14	Q99558	947 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	ZNF112	Q9UJU3	913 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	CYP46A1	Q9Y6A2	500 aa		9.09	□□□□□ -0.95
RNF41-208	ENST00000550379	IGKV6D-41	A0A0C4DH26	115 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	DDTL	A6NHG4	134 aa	Predicted RBP	9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	ST18	O60284	1047 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	POLR3D	P05423	398 aa	Predicted RBP	9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	RASA1	P20936	1047 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	CDK8	P49336	464 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	RASA3	Q14644	834 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	MAP3K11	Q16584	847 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	MAPKAPK5	Q8IW41	473 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	NEDD1	Q8NHV4	660 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	TRPM4	Q8TD43	1214 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	IGDCC4	Q8TDY8	1250 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	MKL1	Q969V6	931 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	ZNF274	Q96GC6	653 aa	Predicted RBP	9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	DEFB129	Q9H1M3	183 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	ZSWIM5	Q9P217	1185 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	RBM19	Q9Y4C8	960 aa	Known RBP	9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	PCDHAC2	Q9Y5I4	1007 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	TACC3	Q9Y6A5	838 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	NID2	Q14112	1375 aa		9.08	□□□□□ -0.96
RNF41-208	ENST00000550379	SHTN1	A0MZ66	631 aa		9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	PDIA4	P13667	645 aa	Known RBP	9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	CAST	P20810	708 aa	Known RBP	9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	SHMT1	P34896	483 aa		9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	NEK4	P51957	841 aa		9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	SART3	Q15020	963 aa	Known RBP	9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	SEC23A	Q15436	765 aa		9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	SUPT20HL1	Q3ZLR7	823 aa		9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	RALYL	Q86SE5	291 aa	Known RBP	9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	IQCA1	Q86XH1	822 aa		9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	ZSCAN31	Q96LW9	406 aa	Predicted RBP	9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	JAKMIP1	Q96N16	626 aa	Known RBP	9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	TBC1D2	Q9BYX2	928 aa		9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	DNAJC18	Q9H819	358 aa		9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	SH2B1	Q9NRF2	756 aa	Predicted RBP	9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	TAF6L	Q9Y6J9	622 aa		9.07	□□□□□ -0.96
RNF41-208	ENST00000550379	MYH8	P13535	1937 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	PHF20L1	A8MW92	1017 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	MINDY4B	A8MYZ0	360 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	CTNND1	O60716	968 aa	Known RBP	9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	ANTXR2	P58335	489 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	FKBP1B	P68106	108 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	CUL4A	Q13619	759 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	NOL9	Q5SY16	702 aa	Known RBP	9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	DCAF15	Q66K64	600 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	CDC37L1	Q7L3B6	337 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	LDHD	Q86WU2	507 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	ZFPM1	Q8IX07	1006 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	ZNF444	Q8N0Y2	327 aa	Predicted RBP	9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	DCPS	Q96C86	337 aa	Known RBP	9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	INTS4	Q96HW7	963 aa	Known RBP	9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	CSRNP1	Q96S65	589 aa		9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	ANGEL1	Q9UNK9	670 aa	Known RBP	9.06	□□□□□ -0.96
RNF41-208	ENST00000550379	NEDD4	P46934	1319 aa		9.05	□□□□□ -0.96
RNF41-208	ENST00000550379	SMARCA1	P28370	1054 aa		9.05	□□□□□ -0.96
RNF41-208	ENST00000550379	HAND2	P61296	217 aa		9.05	□□□□□ -0.96
RNF41-208	ENST00000550379	CTDSPL2	Q05D32	466 aa		9.05	□□□□□ -0.96
RNF41-208	ENST00000550379	TOB2	Q14106	344 aa	Predicted RBP	9.05	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms