RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 FAM84BQ96KN1 310 aaPredicted RBP17.65■□□□□ 0.42
PTCH1-217ENST00000548420 RNPC3Q96LT9 517 aaKnown RBP17.65■□□□□ 0.42
PTCH1-217ENST00000548420 PRDM12Q9H4Q4 367 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 TMOD2Q9NZR1 351 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 AGTPBP1Q9UPW5 1226 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 TFF2Q03403 129 aa17.64■□□□□ 0.41
PTCH1-217ENST00000548420 TCP10Q12799 353 aa17.64■□□□□ 0.41
PTCH1-217ENST00000548420 FLIIQ13045 1269 aa17.64■□□□□ 0.41
PTCH1-217ENST00000548420 CCDC84Q86UT8 332 aaPredicted RBP17.64■□□□□ 0.41
PTCH1-217ENST00000548420 SCYL3Q8IZE3 742 aa17.64■□□□□ 0.41
PTCH1-217ENST00000548420 IL27Q8NEV9 243 aa17.64■□□□□ 0.41
PTCH1-217ENST00000548420 PRDM5Q9NQX1 630 aaPredicted RBP17.64■□□□□ 0.41
PTCH1-217ENST00000548420 NEURL1BA8MQ27 555 aa17.63■□□□□ 0.41
PTCH1-217ENST00000548420 PLIN1O60240 522 aa17.63■□□□□ 0.41
PTCH1-217ENST00000548420 GPR37L1O60883 481 aa17.63■□□□□ 0.41
PTCH1-217ENST00000548420 KCNQ1P51787 676 aa17.63■□□□□ 0.41
PTCH1-217ENST00000548420 ZFPM1Q8IX07 1006 aa17.63■□□□□ 0.41
PTCH1-217ENST00000548420 GAS2L1Q99501 681 aaPredicted RBP17.63■□□□□ 0.41
PTCH1-217ENST00000548420 PDLIM7Q9NR12 457 aa17.63■□□□□ 0.41
PTCH1-217ENST00000548420 ATRNL1Q5VV63 1379 aa17.63■□□□□ 0.41
PTCH1-217ENST00000548420 XRCC5P13010 732 aaKnown RBP17.62■□□□□ 0.41
PTCH1-217ENST00000548420 HIBADHP31937 336 aaKnown RBP17.62■□□□□ 0.41
PTCH1-217ENST00000548420 NFIAQ12857 509 aa17.62■□□□□ 0.41
PTCH1-217ENST00000548420 USP6NLQ92738 828 aa17.62■□□□□ 0.41
PTCH1-217ENST00000548420 TIFAQ96CG3 184 aa17.62■□□□□ 0.41
PTCH1-217ENST00000548420 CDCA7LQ96GN5 454 aa17.62■□□□□ 0.41
PTCH1-217ENST00000548420 IQSEC3Q9UPP2 1182 aaPredicted RBP17.62■□□□□ 0.41
PTCH1-217ENST00000548420 ANKRD18BA2A2Z9 1011 aa17.61■□□□□ 0.41
PTCH1-217ENST00000548420 TRIM75PA6NK02 468 aa17.61■□□□□ 0.41
PTCH1-217ENST00000548420 MRIQ9BWK5 157 aa17.61■□□□□ 0.41
PTCH1-217ENST00000548420 CXXC1Q9P0U4 656 aaPredicted RBP17.61■□□□□ 0.41
PTCH1-217ENST00000548420 CHD7Q9P2D1 2997 aa17.61■□□□□ 0.41
PTCH1-217ENST00000548420 PLXNA1Q9UIW2 1896 aa17.61■□□□□ 0.41
PTCH1-217ENST00000548420 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.6■□□□□ 0.41
PTCH1-217ENST00000548420 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.6■□□□□ 0.41
PTCH1-217ENST00000548420 PBX2P40425 430 aa17.6■□□□□ 0.41
PTCH1-217ENST00000548420 SLC39A5Q6ZMH5 540 aa17.6■□□□□ 0.41
PTCH1-217ENST00000548420 FAM198AQ9UFP1 575 aa17.6■□□□□ 0.41
PTCH1-217ENST00000548420 ZKSCAN1P17029 563 aaPredicted RBP17.59■□□□□ 0.41
PTCH1-217ENST00000548420 GCLCP48506 637 aaPredicted RBP17.59■□□□□ 0.41
PTCH1-217ENST00000548420 CHAF1AQ13111 956 aaPredicted RBP17.59■□□□□ 0.41
PTCH1-217ENST00000548420 TRIM60Q495X7 471 aa17.59■□□□□ 0.41
PTCH1-217ENST00000548420 DNAAF4Q8WXU2 420 aa17.59■□□□□ 0.41
PTCH1-217ENST00000548420 ZNF594Q96JF6 807 aaPredicted RBP17.59■□□□□ 0.41
PTCH1-217ENST00000548420 NUDT12Q9BQG2 462 aa17.59■□□□□ 0.41
PTCH1-217ENST00000548420 NEXNQ0ZGT2 675 aa17.58■□□□□ 0.4
PTCH1-217ENST00000548420 FKBP5Q13451 457 aaPredicted RBP17.58■□□□□ 0.4
PTCH1-217ENST00000548420 PICK1Q9NRD5 415 aa17.58■□□□□ 0.4
PTCH1-217ENST00000548420 MORF4L1Q9UBU8 362 aa17.58■□□□□ 0.4
PTCH1-217ENST00000548420 GRXCR1A8MXD5 290 aa17.57■□□□□ 0.4
PTCH1-217ENST00000548420 DNM1LO00429 736 aa17.57■□□□□ 0.4
PTCH1-217ENST00000548420 NHLH1Q02575 133 aa17.57■□□□□ 0.4
PTCH1-217ENST00000548420 SNX17Q15036 470 aa17.57■□□□□ 0.4
PTCH1-217ENST00000548420 CDC42EP5Q6NZY7 148 aa17.57■□□□□ 0.4
PTCH1-217ENST00000548420 LINS1Q8NG48 757 aa17.57■□□□□ 0.4
PTCH1-217ENST00000548420 PNMA3Q9UL41 463 aa17.57■□□□□ 0.4
PTCH1-217ENST00000548420 DOCK1Q14185 1865 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 LOC285556D6RIA3 1793 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 IGFBP4P22692 258 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 FOXO4P98177 505 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 GCKRQ14397 625 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 GJC2Q5T442 439 aaPredicted RBP17.56■□□□□ 0.4
PTCH1-217ENST00000548420 HHIPL2Q6UWX4 724 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 MRPL50Q8N5N7 158 aaKnown RBP17.56■□□□□ 0.4
PTCH1-217ENST00000548420 PBX4Q9BYU1 374 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 ASCC2Q9H1I8 757 aaPredicted RBP17.56■□□□□ 0.4
PTCH1-217ENST00000548420 TXNRD2Q9NNW7 524 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 FLRT1Q9NZU1 646 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 WDFY4Q6ZS81 3184 aa17.56■□□□□ 0.4
PTCH1-217ENST00000548420 SMIM22K7EJ46 135 aa17.55■□□□□ 0.4
PTCH1-217ENST00000548420 MORN1Q5T089 497 aa17.55■□□□□ 0.4
PTCH1-217ENST00000548420 BEND3Q5T5X7 828 aa17.55■□□□□ 0.4
PTCH1-217ENST00000548420 FBXO33Q7Z6M2 555 aa17.55■□□□□ 0.4
PTCH1-217ENST00000548420 TRMT44Q8IYL2 757 aaKnown RBP17.55■□□□□ 0.4
PTCH1-217ENST00000548420 SOCS4Q8WXH5 440 aa17.55■□□□□ 0.4
PTCH1-217ENST00000548420 LPAR1Q92633 364 aa17.55■□□□□ 0.4
PTCH1-217ENST00000548420 DDX20Q9UHI6 824 aaKnown RBP17.55■□□□□ 0.4
PTCH1-217ENST00000548420 CT47B1P0C2W7 299 aaPredicted RBP17.54■□□□□ 0.4
PTCH1-217ENST00000548420 UBE4AQ14139 1066 aa17.54■□□□□ 0.4
PTCH1-217ENST00000548420 SH3BP5LQ7L8J4 393 aa17.54■□□□□ 0.4
PTCH1-217ENST00000548420 SSH1Q8WYL5 1049 aa17.54■□□□□ 0.4
PTCH1-217ENST00000548420 DOCK2Q92608 1830 aa17.54■□□□□ 0.4
PTCH1-217ENST00000548420 F6X3S4 739 aa17.53■□□□□ 0.4
PTCH1-217ENST00000548420 MAP3K10Q02779 954 aa17.53■□□□□ 0.4
PTCH1-217ENST00000548420 IFIT5Q13325 482 aaKnown RBP17.53■□□□□ 0.4
PTCH1-217ENST00000548420 Q3C1V9 767 aa17.53■□□□□ 0.4
PTCH1-217ENST00000548420 ALDH1L2Q3SY69 923 aa17.53■□□□□ 0.4
PTCH1-217ENST00000548420 PROCA1Q8NCQ7 364 aaPredicted RBP17.53■□□□□ 0.4
PTCH1-217ENST00000548420 TRPV1Q8NER1 839 aa17.53■□□□□ 0.4
PTCH1-217ENST00000548420 TBC1D22AQ8WUA7 517 aa17.53■□□□□ 0.4
PTCH1-217ENST00000548420 LDHAL6AQ6ZMR3 332 aa17.52■□□□□ 0.4
PTCH1-217ENST00000548420 PORCNQ9H237 461 aa17.52■□□□□ 0.4
PTCH1-217ENST00000548420 CD320Q9NPF0 282 aa17.52■□□□□ 0.4
PTCH1-217ENST00000548420 TLL1O43897 1013 aa17.51■□□□□ 0.39
PTCH1-217ENST00000548420 TLE2Q04725 743 aa17.51■□□□□ 0.39
PTCH1-217ENST00000548420 PI4K2BG5E9Z4 385 aa17.5■□□□□ 0.39
PTCH1-217ENST00000548420 CTNND1O60716 968 aaKnown RBP17.5■□□□□ 0.39
PTCH1-217ENST00000548420 RGS2P41220 211 aa17.5■□□□□ 0.39
PTCH1-217ENST00000548420 HMGCS2P54868 508 aa17.5■□□□□ 0.39
PTCH1-217ENST00000548420 SPP2Q13103 211 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms