RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CEP170BQ9Y4F5 1589 aaPredicted RBP17.79■□□□□ 0.44
CUX1-211ENST00000546411 ADD2P35612 726 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 NR5A1Q13285 461 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 TTC38Q5R3I4 469 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 CACTINQ8WUQ7 758 aaKnown RBP17.79■□□□□ 0.44
CUX1-211ENST00000546411 ZSWIM5Q9P217 1185 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 CTNND2Q9UQB3 1225 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 MROH1Q8NDA8 1641 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 EIF3JO75822 258 aaKnown RBP17.78■□□□□ 0.44
CUX1-211ENST00000546411 ADKP55263 362 aaKnown RBP17.78■□□□□ 0.44
CUX1-211ENST00000546411 AMPD3Q01432 767 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 LEKR1Q6ZMV7 388 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 CLEC17AQ6ZS10 378 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 STOX1Q6ZVD7 989 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 GUCA1BQ9UMX6 200 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 CCDC175P0C221 793 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 DYNLL1P63167 89 aaKnown RBP17.78■□□□□ 0.44
CUX1-211ENST00000546411 ARID5AQ03989 594 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 GOLGA8FQ08AF8 430 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 GOLGA8DPQ0D2H9 430 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 TRAPPC3LQ5T215 181 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 TGFBRAP1Q8WUH2 860 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 MMRN2Q9H8L6 949 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 BCL2L12Q9HB09 334 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 FANCLQ9NW38 375 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 RCOR1Q9UKL0 485 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 UBE3CQ15386 1083 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 LONRF3Q496Y0 759 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 TAF3Q5VWG9 929 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 TSG101Q99816 390 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 PCDHA5Q9Y5H7 936 aa17.78■□□□□ 0.44
CUX1-211ENST00000546411 DLC1Q96QB1 1528 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 ZMYM6O95789 1325 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 A0A0G2JLW4 131 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 RASGRF1Q13972 1273 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 ARID5BQ14865 1188 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 LCORLQ8N3X6 602 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 IGSF22Q8N9C0 903 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 ANKRD2Q9GZV1 360 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 GPCPD1Q9NPB8 672 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 MAPK8IP2Q13387 824 aaPredicted RBP17.77■□□□□ 0.44
CUX1-211ENST00000546411 ELF2Q15723 593 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 ZNF569Q5MCW4 686 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 RMND1Q9NWS8 449 aa17.77■□□□□ 0.44
CUX1-211ENST00000546411 HLA-DOAP06340 250 aa17.77■□□□□ 0.43
CUX1-211ENST00000546411 GTF2F1P35269 517 aaKnown RBP eCLIP17.77■□□□□ 0.432e-8■■■□□ 18.7
CUX1-211ENST00000546411 SYCP1Q15431 976 aa17.77■□□□□ 0.43
CUX1-211ENST00000546411 PPLO60437 1756 aa17.77■□□□□ 0.43
CUX1-211ENST00000546411 GOLGA6L9A6NEM1 432 aa17.77■□□□□ 0.43
CUX1-211ENST00000546411 DDIT3P35638 169 aa17.77■□□□□ 0.43
CUX1-211ENST00000546411 LINC00301Q8NCQ3 95 aa17.77■□□□□ 0.43
CUX1-211ENST00000546411 KAZALD1Q96I82 304 aa17.77■□□□□ 0.43
CUX1-211ENST00000546411 CTAGE1Q96RT6 745 aa17.77■□□□□ 0.43
CUX1-211ENST00000546411 DEPDC5O75140 1603 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 GRAMD1CQ8IYS0 662 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 ZFP91Q96JP5 570 aaPredicted RBP17.76■□□□□ 0.43
CUX1-211ENST00000546411 CRACR2AQ9BSW2 395 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 CMA1P23946 247 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 SUSD4Q5VX71 490 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 RTEL1Q9NZ71 1219 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 FOXO4P98177 505 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 PDIA6Q15084 440 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 USPL1Q5W0Q7 1092 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 SMIM5Q71RC9 77 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 C6orf50Q9HD87 102 aa17.76■□□□□ 0.43
CUX1-211ENST00000546411 GOLGA8HP0CJ92 632 aa17.75■□□□□ 0.43
CUX1-211ENST00000546411 ATG3Q9NT62 314 aa17.75■□□□□ 0.43
CUX1-211ENST00000546411 IL6STP40189 918 aaPredicted RBP17.75■□□□□ 0.43
CUX1-211ENST00000546411 KIF23Q02241 960 aaPredicted RBP17.75■□□□□ 0.43
CUX1-211ENST00000546411 SPAG1Q07617 926 aa17.75■□□□□ 0.43
CUX1-211ENST00000546411 LRRC8AQ8IWT6 810 aa17.75■□□□□ 0.43
CUX1-211ENST00000546411 RRP36Q96EU6 259 aaKnown RBP17.75■□□□□ 0.43
CUX1-211ENST00000546411 RBM28Q9NW13 759 aaKnown RBP17.75■□□□□ 0.43
CUX1-211ENST00000546411 PREX1Q8TCU6 1659 aa17.75■□□□□ 0.43
CUX1-211ENST00000546411 BMS1Q14692 1282 aaKnown RBP17.74■□□□□ 0.43
CUX1-211ENST00000546411 ATG9AQ7Z3C6 839 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 GPKOWQ92917 476 aaPredicted RBP eCLIP17.74■□□□□ 0.437e-6■□□□□ 10
CUX1-211ENST00000546411 CAPZA3Q96KX2 299 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 DESI2Q9BSY9 194 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 CARD6Q9BX69 1037 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 RHOXF2BP0C7M4 288 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 KRT222Q8N1A0 295 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 RHOXF2Q9BQY4 288 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 TAB2Q9NYJ8 693 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 FBXO3Q9UK99 471 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 USO1O60763 962 aaKnown RBP17.74■□□□□ 0.43
CUX1-211ENST00000546411 CDC25AP30304 524 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 TXKP42681 527 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 ODF2Q5BJF6 829 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 PYM1Q9BRP8 204 aaKnown RBP17.74■□□□□ 0.43
CUX1-211ENST00000546411 CCDC94Q9BW85 323 aaPredicted RBP17.74■□□□□ 0.43
CUX1-211ENST00000546411 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.74■□□□□ 0.438e-7■■□□□ 12.7
CUX1-211ENST00000546411 MYOM1P52179 1685 aa17.74■□□□□ 0.43
CUX1-211ENST00000546411 AKR1B15C9JRZ8 316 aaPredicted RBP17.74■□□□□ 0.43
CUX1-211ENST00000546411 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.74■□□□□ 0.43
CUX1-211ENST00000546411 SLC39A14Q15043 492 aa17.73■□□□□ 0.43
CUX1-211ENST00000546411 TMEM131LA2VDJ0 1609 aa17.73■□□□□ 0.43
CUX1-211ENST00000546411 TBC1D10CQ8IV04 446 aa17.73■□□□□ 0.43
CUX1-211ENST00000546411 TMEM87AQ8NBN3 555 aa17.73■□□□□ 0.43
CUX1-211ENST00000546411 TDRD7Q8NHU6 1098 aaKnown RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms