RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 CBFA2T2O43439 604 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 CPA1P15085 419 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 CNGA1P29973 690 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 CCDC40Q4G0X9 1142 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 CCDC102BQ68D86 513 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 CELF1Q92879 486 aaKnown RBP9.78□□□□□ -0.84
CLIP1-218ENST00000545889 IMPG2Q9BZV3 1241 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 PSDA5PKW4 1024 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-218ENST00000545889 NOP56O00567 594 aaKnown RBP9.78□□□□□ -0.84
CLIP1-218ENST00000545889 ZBTB24O43167 697 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-218ENST00000545889 KLHL40Q2TBA0 621 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 JAKMIP3Q5VZ66 844 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 KRT222Q8N1A0 295 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 PRC1O43663 620 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 EZRP15311 586 aaKnown RBP9.78□□□□□ -0.84
CLIP1-218ENST00000545889 FOXO4P98177 505 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 SPOUT1Q5T280 376 aaKnown RBP9.78□□□□□ -0.84
CLIP1-218ENST00000545889 CPXCR1Q8N123 301 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 WDR66Q8TBY9 1149 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 USP25Q9UHP3 1055 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 CHST3Q7LGC8 479 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 SYNCQ9H7C4 482 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 SH2B1Q9NRF2 756 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-218ENST00000545889 CWC15Q9P013 229 aaKnown RBP9.78□□□□□ -0.84
CLIP1-218ENST00000545889 PRKAG2Q9UGJ0 569 aa9.78□□□□□ -0.84
CLIP1-218ENST00000545889 ZBTB43O43298 467 aa9.77□□□□□ -0.84
CLIP1-218ENST00000545889 CCP110O43303 1012 aa9.77□□□□□ -0.84
CLIP1-218ENST00000545889 GNAT2P19087 354 aa9.77□□□□□ -0.84
CLIP1-218ENST00000545889 FAM47CQ5HY64 1035 aa9.77□□□□□ -0.84
CLIP1-218ENST00000545889 NSMFQ6X4W1 530 aa9.77□□□□□ -0.84
CLIP1-218ENST00000545889 FAM212AQ96EL1 285 aa9.77□□□□□ -0.84
CLIP1-218ENST00000545889 FERMT1Q9BQL6 677 aa9.77□□□□□ -0.84
CLIP1-218ENST00000545889 LRRC27Q9C0I9 530 aa9.77□□□□□ -0.84
CLIP1-218ENST00000545889 ZBTB21Q9ULJ3 1066 aa9.77□□□□□ -0.84
CLIP1-218ENST00000545889 DTNBO60941 627 aa9.77□□□□□ -0.85
CLIP1-218ENST00000545889 ATP5JP18859 108 aa9.77□□□□□ -0.85
CLIP1-218ENST00000545889 TRIM28Q13263 835 aaKnown RBP9.77□□□□□ -0.85
CLIP1-218ENST00000545889 DOK7Q18PE1 504 aa9.77□□□□□ -0.85
CLIP1-218ENST00000545889 KBTBD3Q8NAB2 608 aa9.77□□□□□ -0.85
CLIP1-218ENST00000545889 ERCC4Q92889 916 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-218ENST00000545889 RASSF4Q9H2L5 321 aa9.77□□□□□ -0.85
CLIP1-218ENST00000545889 TCP10Q12799 353 aa9.77□□□□□ -0.85
CLIP1-218ENST00000545889 AXDND1Q5T1B0 1012 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-218ENST00000545889 SPATA5Q8NB90 893 aa9.77□□□□□ -0.85
CLIP1-218ENST00000545889 CIZ1Q9ULV3 898 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-218ENST00000545889 MBD4O95243 580 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 DCAF15Q66K64 600 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 POTEAQ6S8J7 498 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 APBB1IPQ7Z5R6 666 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 ZNF34Q8IZ26 560 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 NEK1Q96PY6 1258 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 UBN2Q6ZU65 1347 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 PABPC4Q13310 644 aaKnown RBP eCLIP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 MTX1Q13505 466 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 CFAP100Q494V2 611 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 NUP62CLQ9H1M0 184 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 BCCIPQ9P287 314 aaKnown RBP eCLIP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 STRCP1A6NGW2 1772 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 GABPB1Q06547 395 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 RTN1Q16799 776 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 RC3H1Q5TC82 1133 aaKnown RBP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 KIAA1328Q86T90 577 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 RRP36Q96EU6 259 aaKnown RBP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 KAZALD1Q96I82 304 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 C16orf45Q96MC5 204 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 PAGR1Q9BTK6 254 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 ARMT1Q9H993 441 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 V9GYY5 206 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 KLF18A0A0U1RQI7 1052 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 SLFNL1Q499Z3 407 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 TDRD12Q587J7 1177 aaKnown RBP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 TBC1D22AQ8WUA7 517 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 CTNNBL1Q8WYA6 563 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 NBPF3Q9H094 633 aa9.76□□□□□ -0.85
CLIP1-218ENST00000545889 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 SAP30BPQ9UHR5 308 aaKnown RBP9.76□□□□□ -0.85
CLIP1-218ENST00000545889 A0A0D9SFI3 127 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 SMTNL1A8MU46 457 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 RIOK3O14730 519 aaKnown RBP9.75□□□□□ -0.85
CLIP1-218ENST00000545889 ZBED4O75132 1171 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 MTIF2P46199 727 aaKnown RBP9.75□□□□□ -0.85
CLIP1-218ENST00000545889 HOOK3Q86VS8 718 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 FCHSD1Q86WN1 690 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 USP26Q9BXU7 913 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 SSX2IPQ9Y2D8 614 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 ADRA2BP18089 450 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 GTF2IP78347 998 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 SETQ01105 290 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-218ENST00000545889 M0QZ92 97 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 CNNM3Q8NE01 707 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 ZNF804BA4D1E1 1349 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 SGSM2O43147 1006 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 BMS1Q14692 1282 aaKnown RBP9.75□□□□□ -0.85
CLIP1-218ENST00000545889 SPA17Q15506 151 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 TAX1BP1Q86VP1 789 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 FAM177A1Q8N128 213 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-218ENST00000545889 PKD2L1Q9P0L9 805 aa9.75□□□□□ -0.85
CLIP1-218ENST00000545889 ZNF532Q9HCE3 1301 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 CIAO1O76071 339 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms