RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 PDE6AP16499 860 aa14.3□□□□□ -0.12
HDAC4-216ENST00000544989 PTPRAP18433 802 aa14.3□□□□□ -0.12
HDAC4-216ENST00000544989 USP5P45974 858 aa14.3□□□□□ -0.12
HDAC4-216ENST00000544989 PRPF38BQ5VTL8 546 aaKnown RBP14.3□□□□□ -0.12
HDAC4-216ENST00000544989 FASTKD5Q7L8L6 764 aaKnown RBP14.3□□□□□ -0.12
HDAC4-216ENST00000544989 PTPN18Q99952 460 aa14.3□□□□□ -0.12
HDAC4-216ENST00000544989 BCL11AQ9H165 835 aa14.3□□□□□ -0.12
HDAC4-216ENST00000544989 BOLA2Q9H3K6 86 aa14.3□□□□□ -0.12
HDAC4-216ENST00000544989 NDUFB9Q9Y6M9 179 aa14.3□□□□□ -0.12
HDAC4-216ENST00000544989 MAGEB6P1A0A0J9YX57 407 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 ERC2O15083 957 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 CRHR2Q13324 411 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 TAF1CQ15572 869 aaPredicted RBP14.29□□□□□ -0.12
HDAC4-216ENST00000544989 LRRFIP1Q32MZ4 808 aaKnown RBP14.29□□□□□ -0.12
HDAC4-216ENST00000544989 ANKRD23Q86SG2 305 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 METTL16Q86W50 562 aaKnown RBP14.29□□□□□ -0.12
HDAC4-216ENST00000544989 MAPKAPK5Q8IW41 473 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 CRACR2BQ8N4Y2 399 aaPredicted RBP14.29□□□□□ -0.12
HDAC4-216ENST00000544989 MIGA1Q8NAN2 632 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 GCC1Q96CN9 775 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 ERO1AQ96HE7 468 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 CRBNQ96SW2 442 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 CRNKL1Q9BZJ0 848 aaKnown RBP14.29□□□□□ -0.12
HDAC4-216ENST00000544989 TAOK2Q9UL54 1235 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 PCDHB15Q9Y5E8 787 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 ZHX2Q9Y6X8 837 aa14.29□□□□□ -0.12
HDAC4-216ENST00000544989 SMARCA5O60264 1052 aaPredicted RBP14.28□□□□□ -0.12
HDAC4-216ENST00000544989 HDAC1Q13547 482 aaPredicted RBP14.28□□□□□ -0.12
HDAC4-216ENST00000544989 TTC41PQ6P2S7 1318 aa14.28□□□□□ -0.12
HDAC4-216ENST00000544989 TTC6Q86TZ1 520 aa14.28□□□□□ -0.12
HDAC4-216ENST00000544989 ZNF532Q9HCE3 1301 aa14.27□□□□□ -0.12
HDAC4-216ENST00000544989 BTBD19C9JJ37 291 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 ASNSP08243 561 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 CAP2P40123 477 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 DYNLL1P63167 89 aaKnown RBP14.27□□□□□ -0.13
HDAC4-216ENST00000544989 SP3Q02447 781 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 UBE3CQ15386 1083 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 FAM43AQ8N2R8 423 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 RIOK1Q9BRS2 568 aaKnown RBP14.27□□□□□ -0.13
HDAC4-216ENST00000544989 EHD4Q9H223 541 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 AS3MTQ9HBK9 375 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 SLC45A1Q9Y2W3 748 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 AFG3L2Q9Y4W6 797 aa14.27□□□□□ -0.13
HDAC4-216ENST00000544989 MYO5AQ9Y4I1 1855 aaKnown RBP14.27□□□□□ -0.13
HDAC4-216ENST00000544989 HTTP42858 3142 aa14.26□□□□□ -0.13
HDAC4-216ENST00000544989 A0A0G2JLL6 359 aaPredicted RBP14.26□□□□□ -0.13
HDAC4-216ENST00000544989 TCRBV5S4A2TA0A5A2 114 aa14.26□□□□□ -0.13
HDAC4-216ENST00000544989 TLR2O60603 784 aa14.26□□□□□ -0.13
HDAC4-216ENST00000544989 ADD2P35612 726 aa14.26□□□□□ -0.13
HDAC4-216ENST00000544989 PRRT2Q7Z6L0 340 aaPredicted RBP14.26□□□□□ -0.13
HDAC4-216ENST00000544989 DDRGK1Q96HY6 314 aa14.26□□□□□ -0.13
HDAC4-216ENST00000544989 PARK7Q99497 189 aaKnown RBP14.26□□□□□ -0.13
HDAC4-216ENST00000544989 PALD1Q9ULE6 856 aa14.26□□□□□ -0.13
HDAC4-216ENST00000544989 FOCADQ5VW36 1801 aa14.26□□□□□ -0.13
HDAC4-216ENST00000544989 USP17L5A8MUK1 530 aa14.25□□□□□ -0.13
HDAC4-216ENST00000544989 GLRX3O76003 335 aaKnown RBP14.25□□□□□ -0.13
HDAC4-216ENST00000544989 ZFYP08048 801 aaPredicted RBP14.25□□□□□ -0.13
HDAC4-216ENST00000544989 KIF22Q14807 665 aa14.25□□□□□ -0.13
HDAC4-216ENST00000544989 AMOTL1Q8IY63 956 aa14.25□□□□□ -0.13
HDAC4-216ENST00000544989 R3HDMLQ9H3Y0 253 aa14.25□□□□□ -0.13
HDAC4-216ENST00000544989 RWDD1Q9H446 243 aaPredicted RBP14.25□□□□□ -0.13
HDAC4-216ENST00000544989 ATP8A2Q9NTI2 1148 aa14.25□□□□□ -0.13
HDAC4-216ENST00000544989 SERPINB13Q9UIV8 391 aa14.25□□□□□ -0.13
HDAC4-216ENST00000544989 DOCK1Q14185 1865 aa14.25□□□□□ -0.13
HDAC4-216ENST00000544989 PDHXO00330 501 aa14.24□□□□□ -0.13
HDAC4-216ENST00000544989 GNRH1P01148 92 aa14.24□□□□□ -0.13
HDAC4-216ENST00000544989 POLR3DP05423 398 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-216ENST00000544989 PABPC4Q13310 644 aaKnown RBP eCLIP14.24□□□□□ -0.13
HDAC4-216ENST00000544989 FBXO46Q6PJ61 603 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-216ENST00000544989 PROCA1Q8NCQ7 364 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-216ENST00000544989 ZNF280CQ8ND82 737 aa14.24□□□□□ -0.13
HDAC4-216ENST00000544989 SAP30BPQ9UHR5 308 aaKnown RBP14.24□□□□□ -0.13
HDAC4-216ENST00000544989 CENPFP49454 3210 aa14.24□□□□□ -0.13
HDAC4-216ENST00000544989 TRIM75PA6NK02 468 aa14.23□□□□□ -0.13
HDAC4-216ENST00000544989 FAM196BA6NMK8 535 aa14.23□□□□□ -0.13
HDAC4-216ENST00000544989 MX1P20591 662 aa14.23□□□□□ -0.13
HDAC4-216ENST00000544989 KBTBD3Q8NAB2 608 aa14.23□□□□□ -0.13
HDAC4-216ENST00000544989 EDC3Q96F86 508 aaKnown RBP14.23□□□□□ -0.13
HDAC4-216ENST00000544989 WDR18Q9BV38 432 aa14.23□□□□□ -0.13
HDAC4-216ENST00000544989 EFCC1Q9HA90 598 aa14.23□□□□□ -0.13
HDAC4-216ENST00000544989 PNMA3Q9UL41 463 aa14.23□□□□□ -0.13
HDAC4-216ENST00000544989 CDK5RAP2Q96SN8 1893 aa14.23□□□□□ -0.13
HDAC4-216ENST00000544989 MBD4O95243 580 aa14.22□□□□□ -0.13
HDAC4-216ENST00000544989 MOGSQ13724 837 aa14.22□□□□□ -0.13
HDAC4-216ENST00000544989 ANKRD45Q5TZF3 282 aa14.22□□□□□ -0.13
HDAC4-216ENST00000544989 GADL1Q6ZQY3 521 aa14.22□□□□□ -0.13
HDAC4-216ENST00000544989 DCP1AQ9NPI6 582 aaPredicted RBP14.22□□□□□ -0.13
HDAC4-216ENST00000544989 MCM9Q9NXL9 1143 aa14.22□□□□□ -0.13
HDAC4-216ENST00000544989 AGTPBP1Q9UPW5 1226 aa14.22□□□□□ -0.13
HDAC4-216ENST00000544989 TRIM17Q9Y577 477 aa14.22□□□□□ -0.13
HDAC4-216ENST00000544989 BRCA2P51587 3418 aa14.22□□□□□ -0.13
HDAC4-216ENST00000544989 MYH1P12882 1939 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 C19orf81C9J6K1 198 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 SPP2Q13103 211 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 SH3D19Q5HYK7 790 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 GPAT2Q6NUI2 795 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 TATDN1Q6P1N9 297 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 OTOP1Q7RTM1 612 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 TICAM2Q86XR7 235 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 LCORLQ8N3X6 602 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms