RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 SLFNL1Q499Z3 407 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 OTUD7BQ6GQQ9 843 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 FAM43AQ8N2R8 423 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 PI4K2BQ8TCG2 481 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 ZNF296Q8WUU4 475 aaPredicted RBP13.85□□□□□ -0.19
YBX3-216ENST00000544622 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.85□□□□□ -0.19
YBX3-216ENST00000544622 ZCCHC17Q9NP64 241 aaKnown RBP13.85□□□□□ -0.19
YBX3-216ENST00000544622 PALD1Q9ULE6 856 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 AFG3L2Q9Y4W6 797 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 AK9Q5TCS8 1911 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 TTC41PQ6P2S7 1318 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 CDK5RAP2Q96SN8 1893 aa13.84□□□□□ -0.19
YBX3-216ENST00000544622 MAGEB6P1A0A0J9YX57 407 aa13.84□□□□□ -0.19
YBX3-216ENST00000544622 FAM196BA6NMK8 535 aa13.84□□□□□ -0.19
YBX3-216ENST00000544622 CETPP11597 493 aa13.84□□□□□ -0.19
YBX3-216ENST00000544622 TSHZ3Q63HK5 1081 aa13.84□□□□□ -0.19
YBX3-216ENST00000544622 SMC5Q8IY18 1101 aa13.84□□□□□ -0.19
YBX3-216ENST00000544622 OTUD7AQ8TE49 926 aaPredicted RBP13.84□□□□□ -0.19
YBX3-216ENST00000544622 SIPA1L1O43166 1804 aa13.84□□□□□ -0.19
YBX3-216ENST00000544622 HTTP42858 3142 aa13.84□□□□□ -0.19
YBX3-216ENST00000544622 BTBD19C9JJ37 291 aa13.83□□□□□ -0.2
YBX3-216ENST00000544622 IGHDP01880 384 aa13.83□□□□□ -0.2
YBX3-216ENST00000544622 CAP2P40123 477 aa13.83□□□□□ -0.2
YBX3-216ENST00000544622 CRHR2Q13324 411 aa13.83□□□□□ -0.2
YBX3-216ENST00000544622 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.83□□□□□ -0.2
YBX3-216ENST00000544622 ZHX2Q9Y6X8 837 aa13.83□□□□□ -0.2
YBX3-216ENST00000544622 CENPFP49454 3210 aa13.83□□□□□ -0.2
YBX3-216ENST00000544622 USP5P45974 858 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 JAG1P78504 1218 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 ANKRD45Q5TZF3 282 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 TATDN1Q6P1N9 297 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 LCORLQ8N3X6 602 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 KBTBD3Q8NAB2 608 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 GPATCH3Q96I76 525 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 EHD4Q9H223 541 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 PICK1Q9NRD5 415 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 STAP2Q9UGK3 403 aa13.82□□□□□ -0.2
YBX3-216ENST00000544622 A0A0G2JLL6 359 aaPredicted RBP13.81□□□□□ -0.2
YBX3-216ENST00000544622 MX1P20591 662 aa13.81□□□□□ -0.2
YBX3-216ENST00000544622 PLCD1P51178 756 aa13.81□□□□□ -0.2
YBX3-216ENST00000544622 GABPAQ06546 454 aa13.81□□□□□ -0.2
YBX3-216ENST00000544622 GPAT2Q6NUI2 795 aa13.81□□□□□ -0.2
YBX3-216ENST00000544622 PRRT2Q7Z6L0 340 aaPredicted RBP13.81□□□□□ -0.2
YBX3-216ENST00000544622 ANKRD23Q86SG2 305 aa13.81□□□□□ -0.2
YBX3-216ENST00000544622 MCOLN1Q9GZU1 580 aa13.81□□□□□ -0.2
YBX3-216ENST00000544622 PUS7LQ9H0K6 701 aaKnown RBP13.81□□□□□ -0.2
YBX3-216ENST00000544622 RWDD1Q9H446 243 aaPredicted RBP13.81□□□□□ -0.2
YBX3-216ENST00000544622 DCP1AQ9NPI6 582 aaPredicted RBP13.81□□□□□ -0.2
YBX3-216ENST00000544622 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.81□□□□□ -0.2
YBX3-216ENST00000544622 SAP30BPQ9UHR5 308 aaKnown RBP13.81□□□□□ -0.2
YBX3-216ENST00000544622 BRCA2P51587 3418 aa13.81□□□□□ -0.2
YBX3-216ENST00000544622 PHIPQ8WWQ0 1821 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 ERC2O15083 957 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 TLR2O60603 784 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 FKTNO75072 461 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 GLRX3O76003 335 aaKnown RBP13.8□□□□□ -0.2
YBX3-216ENST00000544622 HLA-DOAP06340 250 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 ZSCAN25Q6NSZ9 544 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 CTU1Q7Z7A3 348 aaKnown RBP13.8□□□□□ -0.2
YBX3-216ENST00000544622 TTC6Q86TZ1 520 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 SDR42E1Q8WUS8 393 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 ABHD8Q96I13 439 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 CRNKL1Q9BZJ0 848 aaKnown RBP13.8□□□□□ -0.2
YBX3-216ENST00000544622 ARMT1Q9H993 441 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 ATP8A2Q9NTI2 1148 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 GINM1Q9NU53 330 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 SERPINB13Q9UIV8 391 aa13.8□□□□□ -0.2
YBX3-216ENST00000544622 DDX60LQ5H9U9 1706 aaKnown RBP13.8□□□□□ -0.2
YBX3-216ENST00000544622 DOCK1Q14185 1865 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 PRKAB2O43741 272 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 MBD4O95243 580 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 CAP1Q01518 475 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 EVX2Q03828 476 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 DGKZQ13574 1117 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 TAF1CQ15572 869 aaPredicted RBP13.79□□□□□ -0.2
YBX3-216ENST00000544622 CCDC84Q86UT8 332 aaPredicted RBP13.79□□□□□ -0.2
YBX3-216ENST00000544622 OSBP2Q969R2 916 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 STRBPQ96SI9 672 aaKnown RBP13.79□□□□□ -0.2
YBX3-216ENST00000544622 WDR18Q9BV38 432 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 TBC1D2Q9BYX2 928 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 ZFYVE28Q9HCC9 887 aa13.79□□□□□ -0.2
YBX3-216ENST00000544622 TRIM75PA6NK02 468 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 USP17L5A8MUK1 530 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 PDHXO00330 501 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 RNF113AO15541 343 aaKnown RBP13.78□□□□□ -0.2
YBX3-216ENST00000544622 ZFYP08048 801 aaPredicted RBP13.78□□□□□ -0.2
YBX3-216ENST00000544622 ASNSP08243 561 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 PDE1AP54750 535 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 PKN2Q16513 984 aaKnown RBP13.78□□□□□ -0.2
YBX3-216ENST00000544622 SHROOM1Q2M3G4 852 aaPredicted RBP13.78□□□□□ -0.2
YBX3-216ENST00000544622 SH3D19Q5HYK7 790 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 C17orf99Q6UX52 265 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 FASTKD5Q7L8L6 764 aaKnown RBP13.78□□□□□ -0.2
YBX3-216ENST00000544622 ZNF280CQ8ND82 737 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 TAOK2Q9UL54 1235 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 SLC45A1Q9Y2W3 748 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 ADGRA2Q96PE1 1338 aa13.78□□□□□ -0.2
YBX3-216ENST00000544622 MYH1P12882 1939 aa13.77□□□□□ -0.21
YBX3-216ENST00000544622 SHMT1P34896 483 aa13.77□□□□□ -0.21
YBX3-216ENST00000544622 SP3Q02447 781 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 120.5 ms