RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SART3Q15020 963 aaKnown RBP16.72■□□□□ 0.27
VPS33A-209ENST00000544349 APOA5Q6Q788 366 aa16.72■□□□□ 0.27
VPS33A-209ENST00000544349 RAB11FIP4Q86YS3 637 aa16.72■□□□□ 0.27
VPS33A-209ENST00000544349 CERS5Q8N5B7 392 aa16.72■□□□□ 0.27
VPS33A-209ENST00000544349 MCM9Q9NXL9 1143 aa16.72■□□□□ 0.27
VPS33A-209ENST00000544349 CDK5RAP2Q96SN8 1893 aa16.71■□□□□ 0.27
VPS33A-209ENST00000544349 EVX2Q03828 476 aa16.71■□□□□ 0.27
VPS33A-209ENST00000544349 HS1BP3Q53T59 392 aa16.71■□□□□ 0.27
VPS33A-209ENST00000544349 NFXL1Q6ZNB6 911 aa16.71■□□□□ 0.27
VPS33A-209ENST00000544349 ZKSCAN3Q9BRR0 538 aa16.71■□□□□ 0.27
VPS33A-209ENST00000544349 DBNDD1Q9H9R9 158 aa16.71■□□□□ 0.27
VPS33A-209ENST00000544349 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.71■□□□□ 0.27
VPS33A-209ENST00000544349 USP17L8P0C7I0 530 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 CYP2D6P10635 497 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 PLCG2P16885 1265 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 MSNP26038 577 aaKnown RBP16.7■□□□□ 0.26
VPS33A-209ENST00000544349 TGFBRAP1Q8WUH2 860 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 NOL7Q9UMY1 257 aaKnown RBP16.7■□□□□ 0.26
VPS33A-209ENST00000544349 KIF3AQ9Y496 699 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 ERICH2A1L162 156 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 CCDC69A6NI79 296 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 SLC3A2P08195 630 aaKnown RBP16.7■□□□□ 0.26
VPS33A-209ENST00000544349 METAP2P50579 478 aaKnown RBP eCLIP16.7■□□□□ 0.26
VPS33A-209ENST00000544349 WTAPQ15007 396 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 C12orf60Q5U649 245 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 TMTC2Q8N394 836 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 TTLL6Q8N841 843 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 FUCA2Q9BTY2 467 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 KIF13BQ9NQT8 1826 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 NAV1Q8NEY1 1877 aa16.7■□□□□ 0.26
VPS33A-209ENST00000544349 ZBTB43O43298 467 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 C21orf2O43822 256 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 ORC4O43929 436 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 PRDM1O75626 825 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 FDPSP14324 419 aaKnown RBP16.69■□□□□ 0.26
VPS33A-209ENST00000544349 KCNA3P22001 575 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 RHBDL3P58872 404 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 UBAC1Q9BSL1 405 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 MXD3Q9BW11 206 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 SLC12A7Q9Y666 1083 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 CPLX1O14810 134 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 SUPT20HQ8NEM7 779 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 TTF2Q9UNY4 1162 aaKnown RBP16.69■□□□□ 0.26
VPS33A-209ENST00000544349 DAGLAQ9Y4D2 1042 aa16.69■□□□□ 0.26
VPS33A-209ENST00000544349 F8W031 263 aaPredicted RBP16.68■□□□□ 0.26
VPS33A-209ENST00000544349 ECE2O60344 883 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 RANBP6O60518 1105 aaKnown RBP16.68■□□□□ 0.26
VPS33A-209ENST00000544349 PPFIA3O75145 1194 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 DPEP1P16444 411 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 RXRAP19793 462 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 PDE4BQ07343 736 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 SEC23AQ15436 765 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 MICU3Q86XE3 530 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 TEX11Q8IYF3 940 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 KCNQ5Q9NR82 932 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 USP25Q9UHP3 1055 aa16.68■□□□□ 0.26
VPS33A-209ENST00000544349 TNKSO95271 1327 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 H3BQV1 296 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 ZBTB7AO95365 584 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 CDC27P30260 824 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 ADD1P35611 737 aaKnown RBP16.67■□□□□ 0.26
VPS33A-209ENST00000544349 KRT85P78386 507 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 KIAA2012Q0VF49 1180 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 GRIPAP1Q4V328 841 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 IFFO2Q5TF58 517 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 SYNE3Q6ZMZ3 975 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 MAPKAPK5Q8IW41 473 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 ZSCAN10Q96SZ4 725 aaPredicted RBP16.67■□□□□ 0.26
VPS33A-209ENST00000544349 ZKSCAN5Q9Y2L8 839 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 SCN9AQ15858 1988 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 GOLGA8AA7E2F4 631 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 LIG1P18858 919 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 FKBP1AP62942 108 aaKnown RBP16.67■□□□□ 0.26
VPS33A-209ENST00000544349 AOC3Q16853 763 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 CSPP1Q1MSJ5 1256 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 STRIP1Q5VSL9 837 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 AMOTL1Q8IY63 956 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 MYL10Q9BUA6 226 aa16.67■□□□□ 0.26
VPS33A-209ENST00000544349 FAM217BQ9NTX9 383 aaPredicted RBP16.67■□□□□ 0.26
VPS33A-209ENST00000544349 NID2Q14112 1375 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 ROBO3Q96MS0 1386 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 SLC4A8Q2Y0W8 1093 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 IQCA1Q86XH1 822 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 ZNF646O15015 1829 aaPredicted RBP16.66■□□□□ 0.26
VPS33A-209ENST00000544349 FOCADQ5VW36 1801 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 ELP1O95163 1332 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 FLT1P17948 1338 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 POLR3DP05423 398 aaPredicted RBP16.66■□□□□ 0.26
VPS33A-209ENST00000544349 RCAN1P53805 252 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 CCDC93Q567U6 631 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 CPLX2Q6PUV4 134 aaKnown RBP16.66■□□□□ 0.26
VPS33A-209ENST00000544349 CCDC144CPQ8IYA2 1237 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 ENAHQ8N8S7 591 aaPredicted RBP16.66■□□□□ 0.26
VPS33A-209ENST00000544349 ORC3Q9UBD5 711 aaPredicted RBP16.66■□□□□ 0.26
VPS33A-209ENST00000544349 CCDC39Q9UFE4 941 aa16.66■□□□□ 0.26
VPS33A-209ENST00000544349 DDX60LQ5H9U9 1706 aaKnown RBP16.65■□□□□ 0.26
VPS33A-209ENST00000544349 CDKL5O76039 1030 aa16.65■□□□□ 0.26
VPS33A-209ENST00000544349 NT5C2P49902 561 aa16.65■□□□□ 0.26
VPS33A-209ENST00000544349 RESTQ13127 1097 aa16.65■□□□□ 0.26
VPS33A-209ENST00000544349 NTRK3Q16288 839 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms