RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 ECM29Q5VYK3 1845 aa20.55■□□□□ 0.88
PTPN6-222ENST00000543744 RPS6KA4O75676 772 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 DEXIO95424 95 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 SHC4Q6S5L8 630 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 NBPF11Q86T75 865 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 NBPF5PQ86XG9 351 aaPredicted RBP20.54■□□□□ 0.88
PTPN6-222ENST00000543744 BRIP1Q9BX63 1249 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 TNKSO95271 1327 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 DYNC1I1O14576 645 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 NLRP12P59046 1061 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 DYNLL1P63167 89 aaKnown RBP20.54■□□□□ 0.88
PTPN6-222ENST00000543744 PTF1AQ7RTS3 328 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 FBXO33Q7Z6M2 555 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 DIS3L2Q8IYB7 885 aaKnown RBP20.54■□□□□ 0.88
PTPN6-222ENST00000543744 CCDC82Q8N4S0 544 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 HPSEQ9Y251 543 aa20.54■□□□□ 0.88
PTPN6-222ENST00000543744 A0A1B0GUL6 1792 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 BTBD18B2RXH4 712 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 RRP9O43818 475 aaKnown RBP20.53■□□□□ 0.88
PTPN6-222ENST00000543744 CUTAO60888 179 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 ZPR1O75312 459 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 CCDC144BQ3MJ40 725 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 RESP18Q5W5W9 173 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 SRP68Q9UHB9 627 aaKnown RBP20.53■□□□□ 0.88
PTPN6-222ENST00000543744 TAF1P21675 1872 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 SCN7AQ01118 1682 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 FAM237AA0A1B0GTK4 181 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 BIN1O00499 593 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 PPP2R5BQ15173 497 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 SEC23AQ15436 765 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 CMTR1Q8N1G2 835 aaKnown RBP20.53■□□□□ 0.88
PTPN6-222ENST00000543744 ANKRD2Q9GZV1 360 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 KCNJ14Q9UNX9 436 aa20.53■□□□□ 0.88
PTPN6-222ENST00000543744 GNPATO15228 680 aa20.52■□□□□ 0.88
PTPN6-222ENST00000543744 HSP90AA2PQ14568 343 aaPredicted RBP20.52■□□□□ 0.88
PTPN6-222ENST00000543744 MYRIPQ8NFW9 859 aa20.52■□□□□ 0.88
PTPN6-222ENST00000543744 ZNF384Q8TF68 577 aa20.52■□□□□ 0.88
PTPN6-222ENST00000543744 CACTINQ8WUQ7 758 aaKnown RBP20.52■□□□□ 0.88
PTPN6-222ENST00000543744 CLIC6Q96NY7 704 aa20.52■□□□□ 0.88
PTPN6-222ENST00000543744 FOXP1Q9H334 677 aaPredicted RBP20.52■□□□□ 0.88
PTPN6-222ENST00000543744 CACNA1SQ13698 1873 aa20.52■□□□□ 0.87
PTPN6-222ENST00000543744 KLRK1P26718 216 aa20.51■□□□□ 0.87
PTPN6-222ENST00000543744 TPTE2Q6XPS3 522 aa20.51■□□□□ 0.87
PTPN6-222ENST00000543744 ZSCAN10Q96SZ4 725 aaPredicted RBP20.51■□□□□ 0.87
PTPN6-222ENST00000543744 SMIM22K7EJ46 135 aa20.51■□□□□ 0.87
PTPN6-222ENST00000543744 HIBADHP31937 336 aaKnown RBP20.51■□□□□ 0.87
PTPN6-222ENST00000543744 RILPL1Q5EBL4 403 aa20.51■□□□□ 0.87
PTPN6-222ENST00000543744 KRI1Q8N9T8 703 aaKnown RBP20.51■□□□□ 0.87
PTPN6-222ENST00000543744 PDS5AQ29RF7 1337 aaKnown RBP20.5■□□□□ 0.87
PTPN6-222ENST00000543744 CYP2D7A0A087X1C5 515 aa20.5■□□□□ 0.87
PTPN6-222ENST00000543744 NEMFO60524 1076 aa20.5■□□□□ 0.87
PTPN6-222ENST00000543744 PCP11498 1178 aaKnown RBP20.5■□□□□ 0.87
PTPN6-222ENST00000543744 ENAHQ8N8S7 591 aaPredicted RBP20.5■□□□□ 0.87
PTPN6-222ENST00000543744 NSUN4Q96CB9 384 aaKnown RBP20.5■□□□□ 0.87
PTPN6-222ENST00000543744 TPM4P67936 248 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 AKAP17AQ02040 695 aaKnown RBP20.49■□□□□ 0.87
PTPN6-222ENST00000543744 MECOMQ03112 1051 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 CHAF1AQ13111 956 aaPredicted RBP20.49■□□□□ 0.87
PTPN6-222ENST00000543744 LRRC8AQ8IWT6 810 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 RNF26Q9BY78 433 aaPredicted RBP20.49■□□□□ 0.87
PTPN6-222ENST00000543744 TUBE1Q9UJT0 475 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 CASZ1Q86V15 1759 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 SMTNL1A8MU46 457 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 TOB1P50616 345 aaPredicted RBP20.49■□□□□ 0.87
PTPN6-222ENST00000543744 IFIT1BQ5T764 474 aaKnown RBP20.49■□□□□ 0.87
PTPN6-222ENST00000543744 CTR9Q6PD62 1173 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 CATIPQ7Z7H3 387 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 IQCA1Q86XH1 822 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 TFCP2L1Q9NZI6 479 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 CCNL1Q9UK58 526 aaPredicted RBP20.49■□□□□ 0.87
PTPN6-222ENST00000543744 KCNH3Q9ULD8 1083 aa20.49■□□□□ 0.87
PTPN6-222ENST00000543744 RTCBQ9Y3I0 505 aaKnown RBP20.49■□□□□ 0.87
PTPN6-222ENST00000543744 FGRP09769 529 aa20.48■□□□□ 0.87
PTPN6-222ENST00000543744 USP17L12C9JPN9 530 aa20.48■□□□□ 0.87
PTPN6-222ENST00000543744 USP17L21D6R901 530 aa20.48■□□□□ 0.87
PTPN6-222ENST00000543744 PRDM1O75626 825 aa20.48■□□□□ 0.87
PTPN6-222ENST00000543744 FILIP1Q7Z7B0 1213 aa20.48■□□□□ 0.87
PTPN6-222ENST00000543744 CCDC24Q8N4L8 307 aa20.48■□□□□ 0.87
PTPN6-222ENST00000543744 DUOX1Q9NRD9 1551 aa20.47■□□□□ 0.87
PTPN6-222ENST00000543744 XBP1P17861 261 aa20.47■□□□□ 0.87
PTPN6-222ENST00000543744 RBM10P98175 930 aaKnown RBP20.47■□□□□ 0.87
PTPN6-222ENST00000543744 CNNM3Q8NE01 707 aa20.47■□□□□ 0.87
PTPN6-222ENST00000543744 CRNKL1Q9BZJ0 848 aaKnown RBP20.47■□□□□ 0.87
PTPN6-222ENST00000543744 FAM13BQ9NYF5 915 aa20.47■□□□□ 0.87
PTPN6-222ENST00000543744 NR5A1Q13285 461 aa20.46■□□□□ 0.87
PTPN6-222ENST00000543744 PNOCQ13519 176 aa20.46■□□□□ 0.87
PTPN6-222ENST00000543744 LONRF3Q496Y0 759 aa20.46■□□□□ 0.87
PTPN6-222ENST00000543744 ISM2Q6H9L7 571 aa20.46■□□□□ 0.87
PTPN6-222ENST00000543744 KRBA2Q6ZNG9 492 aa20.46■□□□□ 0.87
PTPN6-222ENST00000543744 AATFQ9NY61 560 aaKnown RBP eCLIP20.46■□□□□ 0.87
PTPN6-222ENST00000543744 CALM1P0DP23 149 aa20.46■□□□□ 0.87
PTPN6-222ENST00000543744 CALM2P0DP24 149 aa20.46■□□□□ 0.87
PTPN6-222ENST00000543744 CALM3P0DP25 149 aa20.46■□□□□ 0.87
PTPN6-222ENST00000543744 ARHGEF1Q92888 912 aaKnown RBP20.46■□□□□ 0.87
PTPN6-222ENST00000543744 RBM28Q9NW13 759 aaKnown RBP20.46■□□□□ 0.87
PTPN6-222ENST00000543744 IKBKBO14920 756 aa20.45■□□□□ 0.86
PTPN6-222ENST00000543744 NPHP1O15259 732 aa20.45■□□□□ 0.86
PTPN6-222ENST00000543744 PTPREP23469 700 aa20.45■□□□□ 0.86
PTPN6-222ENST00000543744 ARID5BQ14865 1188 aa20.45■□□□□ 0.86
PTPN6-222ENST00000543744 NCAPHQ15003 741 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms