RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 PI4KAP2A4QPH2 592 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 IGKV5-2P06315 115 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 CYP2B6P20813 491 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 EMP3P54852 163 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 DSG2Q14126 1118 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 CCDC85BQ15834 202 aaPredicted RBP6.09□□□□□ -1.43
LIMS1-214ENST00000542845 TAF7LQ5H9L4 462 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 C9orf50Q5SZB4 431 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 FASTKD5Q7L8L6 764 aaKnown RBP6.09□□□□□ -1.43
LIMS1-214ENST00000542845 ALYREFQ86V81 257 aaKnown RBP6.09□□□□□ -1.43
LIMS1-214ENST00000542845 PI4KAP1Q8N8J0 262 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 ADAMTS19Q8TE59 1207 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 TEKT1Q969V4 418 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 ZNF594Q96JF6 807 aaPredicted RBP6.09□□□□□ -1.43
LIMS1-214ENST00000542845 PRDM5Q9NQX1 630 aaPredicted RBP6.09□□□□□ -1.43
LIMS1-214ENST00000542845 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.09□□□□□ -1.43
LIMS1-214ENST00000542845 OGDHLQ9ULD0 1010 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 EYSQ5T1H1 3165 aa6.09□□□□□ -1.43
LIMS1-214ENST00000542845 TCF20Q9UGU0 1960 aaKnown RBP6.08□□□□□ -1.44
LIMS1-214ENST00000542845 CXCL11O14625 94 aa6.08□□□□□ -1.44
LIMS1-214ENST00000542845 TRIM66O15016 1216 aa6.08□□□□□ -1.44
LIMS1-214ENST00000542845 HOXB7P09629 217 aa6.08□□□□□ -1.44
LIMS1-214ENST00000542845 HIBADHP31937 336 aaKnown RBP6.08□□□□□ -1.44
LIMS1-214ENST00000542845 IFIT5Q13325 482 aaKnown RBP6.08□□□□□ -1.44
LIMS1-214ENST00000542845 C15orf52Q6ZUT6 534 aaKnown RBP6.08□□□□□ -1.44
LIMS1-214ENST00000542845 VPS37DQ86XT2 251 aa6.08□□□□□ -1.44
LIMS1-214ENST00000542845 HS3ST6Q96QI5 342 aa6.08□□□□□ -1.44
LIMS1-214ENST00000542845 UHRF1Q96T88 793 aaPredicted RBP6.08□□□□□ -1.44
LIMS1-214ENST00000542845 PICK1Q9NRD5 415 aa6.08□□□□□ -1.44
LIMS1-214ENST00000542845 CNNM1Q9NRU3 951 aa6.08□□□□□ -1.44
LIMS1-214ENST00000542845 EMILIN3Q9NT22 766 aa6.08□□□□□ -1.44
LIMS1-214ENST00000542845 ATP11BQ9Y2G3 1177 aa6.08□□□□□ -1.44
LIMS1-214ENST00000542845 TRIM75PA6NK02 468 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 NEURL1BA8MQ27 555 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 H7C1W4 665 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 CNGA1P29973 690 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 CCND3P30281 292 aaPredicted RBP6.07□□□□□ -1.44
LIMS1-214ENST00000542845 GRIN2CQ14957 1233 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 KSR2Q6VAB6 950 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 LDHAL6AQ6ZMR3 332 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 CCDC84Q86UT8 332 aaPredicted RBP6.07□□□□□ -1.44
LIMS1-214ENST00000542845 FAM83AQ86UY5 434 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 TDRD7Q8NHU6 1098 aaKnown RBP6.07□□□□□ -1.44
LIMS1-214ENST00000542845 FAM151AQ8WW52 585 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 TRIB2Q92519 343 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 BADQ92934 168 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 FAM84BQ96KN1 310 aaPredicted RBP6.07□□□□□ -1.44
LIMS1-214ENST00000542845 ASB2Q96Q27 587 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 OCEL1Q9H607 264 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 MBIPQ9NS73 344 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 HCN4Q9Y3Q4 1203 aa6.07□□□□□ -1.44
LIMS1-214ENST00000542845 A0A1B0GUL6 1792 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 A0A0G2JLL6 359 aaPredicted RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 FAM205CA6NFA0 338 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 CSF1RP07333 972 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 COL6A1P12109 1028 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 IGFBP4P22692 258 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 RTP1P59025 263 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 MRPS5P82675 430 aaKnown RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 SMAD3P84022 425 aaKnown RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 CACNB2Q08289 660 aaPredicted RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 TREML2Q5T2D2 321 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 CCDC30Q5VVM6 783 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 PRRT2Q7Z6L0 340 aaPredicted RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 ZSCAN29Q8IWY8 852 aaPredicted RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 CCAR1Q8IX12 1150 aaKnown RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 ATXN2LQ8WWM7 1075 aaKnown RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 NECAB3Q96P71 396 aaPredicted RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 GAS2L1Q99501 681 aaPredicted RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 ARID3AQ99856 593 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 C1QTNF1Q9BXJ1 281 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 ZNF112Q9UJU3 913 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 GJD2Q9UKL4 321 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 AFG3L2Q9Y4W6 797 aa6.06□□□□□ -1.44
LIMS1-214ENST00000542845 LRRFIP2Q9Y608 721 aaKnown RBP6.06□□□□□ -1.44
LIMS1-214ENST00000542845 COL2A1P02458 1487 aaPredicted RBP6.05□□□□□ -1.44
LIMS1-214ENST00000542845 PLXNB2O15031 1838 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 ZNF316A6NFI3 1004 aaPredicted RBP6.05□□□□□ -1.44
LIMS1-214ENST00000542845 PEX10O60683 326 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 SLURP2P0DP57 97 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 ZKSCAN1P17029 563 aaPredicted RBP6.05□□□□□ -1.44
LIMS1-214ENST00000542845 PTPRAP18433 802 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 ZEB1P37275 1124 aaPredicted RBP6.05□□□□□ -1.44
LIMS1-214ENST00000542845 GCKRQ14397 625 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 CCL14Q16627 93 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 FAM110CQ1W6H9 321 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 CCDC57Q2TAC2 916 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 NOL9Q5SY16 702 aaKnown RBP6.05□□□□□ -1.44
LIMS1-214ENST00000542845 APOBEC3HQ6NTF7 200 aaKnown RBP6.05□□□□□ -1.44
LIMS1-214ENST00000542845 POTEEQ6S8J3 1075 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 LMBR1LQ6UX01 489 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 ZFPM1Q8IX07 1006 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 PLPP6Q8IY26 295 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 SCYL3Q8IZE3 742 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 C8orf58Q8NAV2 365 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 SNX27Q96L92 541 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 RNPC3Q96LT9 517 aaKnown RBP6.05□□□□□ -1.44
LIMS1-214ENST00000542845 ZDHHC15Q96MV8 337 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 LRFN3Q9BTN0 628 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 729 ms