RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-205ENST00000542541 NBPF12Q5TAG4 269 aaPredicted RBP27.44■■□□□ 1.98
HOMER3-205ENST00000542541 SWAP70Q9UH65 585 aa27.44■■□□□ 1.98
HOMER3-205ENST00000542541 SLC27A2O14975 620 aa27.43■■□□□ 1.98
HOMER3-205ENST00000542541 TBC1D12O60347 775 aa27.43■■□□□ 1.98
HOMER3-205ENST00000542541 CYP21A2P08686 494 aa27.43■■□□□ 1.98
HOMER3-205ENST00000542541 PCP11498 1178 aaKnown RBP27.43■■□□□ 1.98
HOMER3-205ENST00000542541 PDE4BQ07343 736 aa27.43■■□□□ 1.98
HOMER3-205ENST00000542541 PRAMEF18Q5VWM3 479 aa27.43■■□□□ 1.98
HOMER3-205ENST00000542541 DCAF15Q66K64 600 aa27.43■■□□□ 1.98
HOMER3-205ENST00000542541 METTL16Q86W50 562 aaKnown RBP27.43■■□□□ 1.98
HOMER3-205ENST00000542541 RNF41Q9H4P4 317 aaPredicted RBP27.43■■□□□ 1.98
HOMER3-205ENST00000542541 POLR2AP24928 1970 aaKnown RBP27.42■■□□□ 1.98
HOMER3-205ENST00000542541 TOMM70O94826 608 aa27.42■■□□□ 1.98
HOMER3-205ENST00000542541 CDAN1Q8IWY9 1227 aa27.42■■□□□ 1.98
HOMER3-205ENST00000542541 SMC1BQ8NDV3 1235 aa27.42■■□□□ 1.98
HOMER3-205ENST00000542541 CDCA5Q96FF9 252 aa27.42■■□□□ 1.98
HOMER3-205ENST00000542541 ROBO3Q96MS0 1386 aa27.42■■□□□ 1.98
HOMER3-205ENST00000542541 MYH1P12882 1939 aa27.42■■□□□ 1.98
HOMER3-205ENST00000542541 BAZ2AQ9UIF9 1905 aaKnown RBP27.42■■□□□ 1.98
HOMER3-205ENST00000542541 CTDSPL2Q05D32 466 aa27.41■■□□□ 1.98
HOMER3-205ENST00000542541 C16orf86Q6ZW13 317 aa27.41■■□□□ 1.98
HOMER3-205ENST00000542541 DDX60LQ5H9U9 1706 aaKnown RBP27.41■■□□□ 1.98
HOMER3-205ENST00000542541 MAP3K10Q02779 954 aa27.41■■□□□ 1.98
HOMER3-205ENST00000542541 GABPAQ06546 454 aa27.41■■□□□ 1.98
HOMER3-205ENST00000542541 AKNAD1Q5T1N1 836 aa27.41■■□□□ 1.98
HOMER3-205ENST00000542541 MFSD6Q6ZSS7 791 aa27.41■■□□□ 1.98
HOMER3-205ENST00000542541 XPO5Q9HAV4 1204 aaKnown RBP eCLIP27.41■■□□□ 1.98
HOMER3-205ENST00000542541 RBM46Q8TBY0 533 aaKnown RBP27.4■■□□□ 1.98
HOMER3-205ENST00000542541 DYNLL2Q96FJ2 89 aa27.4■■□□□ 1.98
HOMER3-205ENST00000542541 MKNK2Q9HBH9 465 aa27.4■■□□□ 1.98
HOMER3-205ENST00000542541 CDK8P49336 464 aa27.39■■□□□ 1.98
HOMER3-205ENST00000542541 EVX2Q03828 476 aa27.39■■□□□ 1.98
HOMER3-205ENST00000542541 TSGA10IPQ3SY00 556 aa27.39■■□□□ 1.98
HOMER3-205ENST00000542541 MIGA2Q7L4E1 593 aa27.39■■□□□ 1.98
HOMER3-205ENST00000542541 STAG1Q8WVM7 1258 aa27.39■■□□□ 1.98
HOMER3-205ENST00000542541 KCNB2Q92953 911 aa27.39■■□□□ 1.98
HOMER3-205ENST00000542541 SMIM22K7EJ46 135 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 PPP1R12BO60237 982 aaPredicted RBP27.38■■□□□ 1.97
HOMER3-205ENST00000542541 ITGBL1O95965 494 aaPredicted RBP27.38■■□□□ 1.97
HOMER3-205ENST00000542541 KRT32Q14532 448 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 DLK2Q6UY11 383 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 STK11IPQ8N1F8 1099 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 C22orf23Q9BZE7 217 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 FGRP09769 529 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 NT5C2P49902 561 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 TRDNQ13061 729 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 TBC1D10CQ8IV04 446 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 ZNF341Q9BYN7 854 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 NBPF3Q9H094 633 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 CNNM2Q9H8M5 875 aa27.38■■□□□ 1.97
HOMER3-205ENST00000542541 TRAF5O00463 557 aa27.37■■□□□ 1.97
HOMER3-205ENST00000542541 TOMM22Q9NS69 142 aa27.37■■□□□ 1.97
HOMER3-205ENST00000542541 E7EWF7 191 aa27.36■■□□□ 1.97
HOMER3-205ENST00000542541 ORC4O43929 436 aa27.36■■□□□ 1.97
HOMER3-205ENST00000542541 ANAPC15P60006 121 aa27.36■■□□□ 1.97
HOMER3-205ENST00000542541 ZNF444Q8N0Y2 327 aaPredicted RBP27.36■■□□□ 1.97
HOMER3-205ENST00000542541 KRT23Q9C075 422 aa27.36■■□□□ 1.97
HOMER3-205ENST00000542541 DNAJC18Q9H819 358 aa27.36■■□□□ 1.97
HOMER3-205ENST00000542541 TATDN1Q6P1N9 297 aa27.35■■□□□ 1.97
HOMER3-205ENST00000542541 RASEFQ8IZ41 740 aa27.35■■□□□ 1.97
HOMER3-205ENST00000542541 SLC44A5Q8NCS7 719 aa27.35■■□□□ 1.97
HOMER3-205ENST00000542541 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.35■■□□□ 1.97
HOMER3-205ENST00000542541 SNX14Q9Y5W7 946 aa27.35■■□□□ 1.97
HOMER3-205ENST00000542541 FAM196BA6NMK8 535 aa27.34■■□□□ 1.97
HOMER3-205ENST00000542541 SHMT1P34896 483 aa27.34■■□□□ 1.97
HOMER3-205ENST00000542541 CCDC17Q96LX7 622 aa27.34■■□□□ 1.97
HOMER3-205ENST00000542541 RBM25P49756 843 aaKnown RBP27.34■■□□□ 1.97
HOMER3-205ENST00000542541 FSTL1Q12841 308 aa27.34■■□□□ 1.97
HOMER3-205ENST00000542541 RALYLQ86SE5 291 aaKnown RBP27.34■■□□□ 1.97
HOMER3-205ENST00000542541 NCOA7Q8NI08 942 aa27.34■■□□□ 1.97
HOMER3-205ENST00000542541 LAMB1P07942 1786 aa27.33■■□□□ 1.97
HOMER3-205ENST00000542541 PRDM1O75626 825 aa27.33■■□□□ 1.97
HOMER3-205ENST00000542541 CERKLQ49MI3 558 aaPredicted RBP27.33■■□□□ 1.97
HOMER3-205ENST00000542541 RRP12Q5JTH9 1297 aaKnown RBP27.33■■□□□ 1.97
HOMER3-205ENST00000542541 ESR2Q92731 530 aa27.33■■□□□ 1.97
HOMER3-205ENST00000542541 ZNF408Q9H9D4 720 aa27.33■■□□□ 1.97
HOMER3-205ENST00000542541 INCENPQ9NQS7 918 aa27.33■■□□□ 1.97
HOMER3-205ENST00000542541 TAF6LQ9Y6J9 622 aa27.33■■□□□ 1.97
HOMER3-205ENST00000542541 SLURP2P0DP57 97 aa27.32■■□□□ 1.96
HOMER3-205ENST00000542541 RASA1P20936 1047 aa27.32■■□□□ 1.96
HOMER3-205ENST00000542541 PSMA5P28066 241 aa27.32■■□□□ 1.96
HOMER3-205ENST00000542541 IREB2P48200 963 aaKnown RBP27.32■■□□□ 1.96
HOMER3-205ENST00000542541 TTLL12Q14166 644 aaPredicted RBP27.32■■□□□ 1.96
HOMER3-205ENST00000542541 ARMC9Q7Z3E5 817 aa27.32■■□□□ 1.96
HOMER3-205ENST00000542541 RANBP6O60518 1105 aaKnown RBP27.31■■□□□ 1.96
HOMER3-205ENST00000542541 USP2O75604 605 aaPredicted RBP27.31■■□□□ 1.96
HOMER3-205ENST00000542541 FKBP1BP68106 108 aa27.31■■□□□ 1.96
HOMER3-205ENST00000542541 PRKG1Q13976 671 aa27.31■■□□□ 1.96
HOMER3-205ENST00000542541 STOX1Q6ZVD7 989 aa27.31■■□□□ 1.96
HOMER3-205ENST00000542541 ZNF112Q9UJU3 913 aa27.31■■□□□ 1.96
HOMER3-205ENST00000542541 TACC3Q9Y6A5 838 aa27.31■■□□□ 1.96
HOMER3-205ENST00000542541 SSC5DA1L4H1 1573 aa27.31■■□□□ 1.96
HOMER3-205ENST00000542541 LAMA4Q16363 1823 aa27.31■■□□□ 1.96
HOMER3-205ENST00000542541 PHF20L1A8MW92 1017 aa27.3■■□□□ 1.96
HOMER3-205ENST00000542541 CELF2O95319 508 aaKnown RBP27.3■■□□□ 1.96
HOMER3-205ENST00000542541 HMGB1P09429 215 aaKnown RBP27.3■■□□□ 1.96
HOMER3-205ENST00000542541 KLRG1Q96E93 195 aa27.3■■□□□ 1.96
HOMER3-205ENST00000542541 TBC1D32Q96NH3 1257 aa27.3■■□□□ 1.96
HOMER3-205ENST00000542541 NEK1Q96PY6 1258 aa27.3■■□□□ 1.96
HOMER3-205ENST00000542541 NEDD4P46934 1319 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms