RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 PICALMQ13492 652 aa10.7□□□□□ -0.7
CLSTN3-212ENST00000541770 IRF5Q13568 498 aa10.7□□□□□ -0.7
CLSTN3-212ENST00000541770 LPIN2Q92539 896 aa10.7□□□□□ -0.7
CLSTN3-212ENST00000541770 CRBNQ96SW2 442 aa10.7□□□□□ -0.7
CLSTN3-212ENST00000541770 PAK6Q9NQU5 681 aaPredicted RBP10.7□□□□□ -0.7
CLSTN3-212ENST00000541770 AFG3L2Q9Y4W6 797 aa10.7□□□□□ -0.7
CLSTN3-212ENST00000541770 PHF20L1A8MW92 1017 aa10.69□□□□□ -0.7
CLSTN3-212ENST00000541770 IL15P40933 162 aaPredicted RBP10.69□□□□□ -0.7
CLSTN3-212ENST00000541770 ATG9AQ7Z3C6 839 aa10.69□□□□□ -0.7
CLSTN3-212ENST00000541770 GDF15Q99988 308 aa10.69□□□□□ -0.7
CLSTN3-212ENST00000541770 CRISPLD2Q9H0B8 497 aa10.69□□□□□ -0.7
CLSTN3-212ENST00000541770 SIL1Q9H173 461 aa10.69□□□□□ -0.7
CLSTN3-212ENST00000541770 GNL3LQ9NVN8 582 aaKnown RBP10.69□□□□□ -0.7
CLSTN3-212ENST00000541770 PA2G4Q9UQ80 394 aaKnown RBP10.69□□□□□ -0.7
CLSTN3-212ENST00000541770 HMMRO75330 724 aa10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 ENTPD3O75355 529 aa10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 CAPN2P17655 700 aa10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 BMP8BP34820 402 aa10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 TREML2Q5T2D2 321 aa10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 DZIP1Q86YF9 867 aaKnown RBP10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 UBE2OQ9C0C9 1292 aaKnown RBP10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 NBPF3Q9H094 633 aa10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 HMX1Q9NP08 348 aaPredicted RBP10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 PNMA3Q9UL41 463 aa10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 AGTPBP1Q9UPW5 1226 aa10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 SLC45A1Q9Y2W3 748 aa10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 NOP58Q9Y2X3 529 aaKnown RBP10.68□□□□□ -0.7
CLSTN3-212ENST00000541770 DDTLA6NHG4 134 aaPredicted RBP10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 FAM196BA6NMK8 535 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 CTNND1O60716 968 aaKnown RBP10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 HMGCRP04035 888 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 MAGEA10P43363 369 aaPredicted RBP10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 TRIM32Q13049 653 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 ATP2B3Q16720 1220 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 SH3BP5LQ7L8J4 393 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 SIRT2Q8IXJ6 389 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 TDHQ8IZJ6 230 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 ANKLE1Q8NAG6 615 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 C11orf49Q9H6J7 331 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 ABCF2Q9UG63 623 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 DENND2AQ9ULE3 1009 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 LOC285556D6RIA3 1793 aa10.67□□□□□ -0.7
CLSTN3-212ENST00000541770 ATRNL1Q5VV63 1379 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 RPTORQ8N122 1335 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 PLXNB2O15031 1838 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 CYP2B6P20813 491 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 PHKA1P46020 1223 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 SPP2Q13103 211 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 G3BP1Q13283 466 aaKnown RBP eCLIP10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 FAM110CQ1W6H9 321 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 ZGPATQ8N5A5 531 aaKnown RBP10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 EXOC6Q8TAG9 804 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 IDI2Q9BXS1 227 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 CEP126Q9P2H0 1117 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 STXBP5LQ9Y2K9 1186 aa10.66□□□□□ -0.7
CLSTN3-212ENST00000541770 SURF6O75683 361 aaKnown RBP10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 BTDP43251 543 aa10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 HMGCS2P54868 508 aa10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 PABPC4Q13310 644 aaKnown RBP eCLIP10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 HSP90AB4PQ58FF6 505 aa10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 GPR153Q6NV75 609 aa10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 SLF2Q8IX21 1173 aa10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 DDX4Q9NQI0 724 aaKnown RBP10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 MTMR10Q9NXD2 777 aa10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 PCDHB15Q9Y5E8 787 aa10.65□□□□□ -0.7
CLSTN3-212ENST00000541770 SALL1Q9NSC2 1324 aa10.64□□□□□ -0.71
CLSTN3-212ENST00000541770 GCLCP48506 637 aaPredicted RBP10.64□□□□□ -0.71
CLSTN3-212ENST00000541770 MDM2Q00987 491 aaPredicted RBP10.64□□□□□ -0.71
CLSTN3-212ENST00000541770 LRIT3Q3SXY7 679 aa10.64□□□□□ -0.71
CLSTN3-212ENST00000541770 ERC1Q8IUD2 1116 aa10.64□□□□□ -0.71
CLSTN3-212ENST00000541770 PROCA1Q8NCQ7 364 aaPredicted RBP10.64□□□□□ -0.71
CLSTN3-212ENST00000541770 TRIB2Q92519 343 aa10.64□□□□□ -0.71
CLSTN3-212ENST00000541770 GPR108Q9NPR9 543 aa10.64□□□□□ -0.71
CLSTN3-212ENST00000541770 AKAP2Q9Y2D5 859 aa10.64□□□□□ -0.71
CLSTN3-212ENST00000541770 GAKO14976 1311 aa10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 SEMA3EO15041 775 aa10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 RAB11FIP3O75154 756 aa10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 PRKAR2AP13861 404 aaKnown RBP10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 ADORA1P30542 326 aa10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 MAP3K10Q02779 954 aa10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 TFCP2Q12800 502 aa10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 CCAR1Q8IX12 1150 aaKnown RBP10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 ZNF280CQ8ND82 737 aa10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 FAM161BQ96MY7 647 aa10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 COL25A1Q9BXS0 654 aaPredicted RBP10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 OSBPL5Q9H0X9 879 aaPredicted RBP10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 ASCC2Q9H1I8 757 aaPredicted RBP10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 FRMPD3Q5JV73 1810 aa10.63□□□□□ -0.71
CLSTN3-212ENST00000541770 MROH7-TTC4A0A0A0MT08 1334 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 ZBTB22O15209 634 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 PEX10O60683 326 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 IRX3P78415 501 aaPredicted RBP10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 OS9Q13438 667 aaPredicted RBP10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 HDAC1Q13547 482 aaPredicted RBP10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 SPTY2D1Q68D10 685 aaPredicted RBP10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 CCDC102BQ68D86 513 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 ERICH6Q7L0X2 663 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 NUDT12Q9BQG2 462 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms