RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 FANCBQ8NB91 859 aa16.89■□□□□ 0.3
CLIP1-216ENST00000541410 ANP32BQ92688 251 aaKnown RBP16.89■□□□□ 0.3
CLIP1-216ENST00000541410 ZNF622Q969S3 477 aaKnown RBP eCLIP16.89■□□□□ 0.31e-6■□□□□ 11.2
CLIP1-216ENST00000541410 NUP62CLQ9H1M0 184 aa16.89■□□□□ 0.3
CLIP1-216ENST00000541410 ATP8A2Q9NTI2 1148 aa16.89■□□□□ 0.3
CLIP1-216ENST00000541410 MYH6P13533 1939 aa16.89■□□□□ 0.29
CLIP1-216ENST00000541410 DOK7Q18PE1 504 aa16.89■□□□□ 0.29
CLIP1-216ENST00000541410 IFIT1BQ5T764 474 aaKnown RBP16.89■□□□□ 0.29
CLIP1-216ENST00000541410 POTEAQ6S8J7 498 aa16.89■□□□□ 0.29
CLIP1-216ENST00000541410 MXD3Q9BW11 206 aa16.89■□□□□ 0.29
CLIP1-216ENST00000541410 GOLPH3LQ9H4A5 285 aa16.89■□□□□ 0.29
CLIP1-216ENST00000541410 RGS17Q9UGC6 210 aaPredicted RBP16.89■□□□□ 0.29
CLIP1-216ENST00000541410 RCOR1Q9UKL0 485 aa16.89■□□□□ 0.29
CLIP1-216ENST00000541410 KCNJ14Q9UNX9 436 aa16.89■□□□□ 0.29
CLIP1-216ENST00000541410 PARP3Q9Y6F1 533 aa16.89■□□□□ 0.29
CLIP1-216ENST00000541410 EN1Q05925 392 aaPredicted RBP16.88■□□□□ 0.29
CLIP1-216ENST00000541410 GNL2Q13823 731 aaKnown RBP16.88■□□□□ 0.29
CLIP1-216ENST00000541410 MYSM1Q5VVJ2 828 aa16.88■□□□□ 0.29
CLIP1-216ENST00000541410 CCAR1Q8IX12 1150 aaKnown RBP16.88■□□□□ 0.29
CLIP1-216ENST00000541410 SLC44A5Q8NCS7 719 aa16.88■□□□□ 0.29
CLIP1-216ENST00000541410 ANO8Q9HCE9 1232 aaPredicted RBP16.88■□□□□ 0.29
CLIP1-216ENST00000541410 LAMB1P07942 1786 aa16.88■□□□□ 0.29
CLIP1-216ENST00000541410 IL1R1P14778 569 aa16.88■□□□□ 0.29
CLIP1-216ENST00000541410 BTDP43251 543 aa16.88■□□□□ 0.29
CLIP1-216ENST00000541410 EZH2Q15910 746 aaKnown RBP16.88■□□□□ 0.29
CLIP1-216ENST00000541410 C15orf52Q6ZUT6 534 aaKnown RBP16.88■□□□□ 0.29
CLIP1-216ENST00000541410 IQCA1Q86XH1 822 aa16.88■□□□□ 0.29
CLIP1-216ENST00000541410 TNMDQ9H2S6 317 aa16.88■□□□□ 0.29
CLIP1-216ENST00000541410 PODXL2Q9NZ53 605 aa16.88■□□□□ 0.29
CLIP1-216ENST00000541410 KIAA1551Q9HCM1 1747 aa16.88■□□□□ 0.29
CLIP1-216ENST00000541410 FMNL1O95466 1100 aaPredicted RBP16.87■□□□□ 0.29
CLIP1-216ENST00000541410 SP8Q8IXZ3 490 aa16.87■□□□□ 0.29
CLIP1-216ENST00000541410 ARPP21Q9UBL0 812 aaPredicted RBP16.87■□□□□ 0.29
CLIP1-216ENST00000541410 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.87■□□□□ 0.29
CLIP1-216ENST00000541410 ATP6V0A2Q9Y487 856 aa16.87■□□□□ 0.29
CLIP1-216ENST00000541410 TSPY2A6NKD2 308 aa16.87■□□□□ 0.29
CLIP1-216ENST00000541410 PLEKHA8P1O95397 391 aa16.87■□□□□ 0.29
CLIP1-216ENST00000541410 IFNAR1P17181 557 aa16.87■□□□□ 0.29
CLIP1-216ENST00000541410 TMTC2Q8N394 836 aa16.87■□□□□ 0.29
CLIP1-216ENST00000541410 PIBF1Q8WXW3 757 aa16.87■□□□□ 0.29
CLIP1-216ENST00000541410 RTFDC1Q9BY42 306 aaPredicted RBP16.87■□□□□ 0.29
CLIP1-216ENST00000541410 PCDHA7Q9UN72 937 aa16.87■□□□□ 0.29
CLIP1-216ENST00000541410 MROH7-TTC4A0A0A0MT08 1334 aa16.87■□□□□ 0.29
CLIP1-216ENST00000541410 COL11A2P13942 1736 aaPredicted RBP16.86■□□□□ 0.29
CLIP1-216ENST00000541410 PLCD1P51178 756 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 TRIM29Q14134 588 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 STK38Q15208 465 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 NBPF11Q86T75 865 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 NOL10Q9BSC4 688 aaKnown RBP16.86■□□□□ 0.29
CLIP1-216ENST00000541410 FUCA2Q9BTY2 467 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 MKRN1Q9UHC7 482 aaKnown RBP16.86■□□□□ 0.29
CLIP1-216ENST00000541410 MTMR7Q9Y216 660 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 CDK5RAP2Q96SN8 1893 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 LETM1O95202 739 aaPredicted RBP16.86■□□□□ 0.29
CLIP1-216ENST00000541410 BAG3O95817 575 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 FGRP09769 529 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 MARCKSP29966 332 aaPredicted RBP16.86■□□□□ 0.29
CLIP1-216ENST00000541410 CCDC173Q0VFZ6 552 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 SF3A1Q15459 793 aaKnown RBP16.86■□□□□ 0.29
CLIP1-216ENST00000541410 MAP3K11Q16584 847 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 CRACR2BQ8N4Y2 399 aaPredicted RBP16.86■□□□□ 0.29
CLIP1-216ENST00000541410 MPNDQ8N594 471 aa16.86■□□□□ 0.29
CLIP1-216ENST00000541410 ERCC4Q92889 916 aaPredicted RBP16.86■□□□□ 0.29
CLIP1-216ENST00000541410 TRIM44Q96DX7 344 aaPredicted RBP16.86■□□□□ 0.29
CLIP1-216ENST00000541410 NPR1P16066 1061 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 GSTO1P78417 241 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 C12orf60Q5U649 245 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 TRIM22Q8IYM9 498 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 LINC00301Q8NCQ3 95 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 PDGFDQ9GZP0 370 aaPredicted RBP16.85■□□□□ 0.29
CLIP1-216ENST00000541410 RTEL1Q9NZ71 1219 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 A0A1B0GVL5 298 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 BTBD18B2RXH4 712 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 TFAP4Q01664 338 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 PDE4BQ07343 736 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 DPP8Q6V1X1 898 aaPredicted RBP16.85■□□□□ 0.29
CLIP1-216ENST00000541410 CATIPQ7Z7H3 387 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 FSIP1Q8NA03 581 aa16.85■□□□□ 0.29
CLIP1-216ENST00000541410 ZC3H12CQ9C0D7 883 aaKnown RBP16.85■□□□□ 0.29
CLIP1-216ENST00000541410 RRAGDQ9NQL2 400 aaPredicted RBP16.85■□□□□ 0.29
CLIP1-216ENST00000541410 LTBP1Q14766 1721 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 A0A087WWV3 80 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 SLC3A2P08195 630 aaKnown RBP16.84■□□□□ 0.29
CLIP1-216ENST00000541410 CHRNA5P30532 468 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 PLCB2Q00722 1185 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 SBK1Q52WX2 424 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 BRAPQ7Z569 592 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 KCNQ5Q9NR82 932 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 TNS1Q9HBL0 1735 aaKnown RBP16.84■□□□□ 0.29
CLIP1-216ENST00000541410 LRRC37AA6NMS7 1700 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 USP17L3A6NCW0 530 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 USP17L4A6NCW7 530 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 ORC4O43929 436 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 LDHCP07864 332 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 PDE6BP35913 854 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 TROAPQ12815 778 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 USP17L1Q7RTZ2 530 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 TEX11Q8IYF3 940 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 PPP1R9BQ96SB3 815 aa16.84■□□□□ 0.29
CLIP1-216ENST00000541410 CLSTN2Q9H4D0 955 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms