RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	RRAGC	Q9HB90	399 aa		11.15	□□□□□ -0.62
DDX55-208	ENST00000541259	ADARB2	Q9NS39	739 aa	Known RBP	11.15	□□□□□ -0.62
DDX55-208	ENST00000541259	ATP8A2	Q9NTI2	1148 aa		11.15	□□□□□ -0.62
DDX55-208	ENST00000541259	TAF6L	Q9Y6J9	622 aa		11.15	□□□□□ -0.62
DDX55-208	ENST00000541259	FLT1	P17948	1338 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	USP17L12	C9JPN9	530 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	USP17L21	D6R901	530 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	EPHX2	P34913	555 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	TDO2	P48775	406 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	HAND2	P61296	217 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	IRX5	P78411	483 aa	Predicted RBP	11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	TCP10	Q12799	353 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	NECTIN1	Q15223	517 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	CTR9	Q6PD62	1173 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	SH3BP5L	Q7L8J4	393 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	CERS3	Q8IU89	383 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	ZNF526	Q8TF50	670 aa	Predicted RBP	11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	IDI2	Q9BXS1	227 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	NAPB	Q9H115	298 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	VEZT	Q9HBM0	779 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	MCM9	Q9NXL9	1143 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	PALD1	Q9ULE6	856 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	TACC3	Q9Y6A5	838 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	CNTNAP1	P78357	1384 aa		11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.14	□□□□□ -0.63
DDX55-208	ENST00000541259	MINDY4B	A8MYZ0	360 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	SLC27A2	O14975	620 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	MYO1B	O43795	1136 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	CYP21A2	P08686	494 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	HSPA4	P34932	840 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	CTDSPL2	Q05D32	466 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	ANGEL2	Q5VTE6	544 aa	Known RBP	11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	CREB3L3	Q68CJ9	461 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	GIMAP6	Q6P9H5	292 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	STK11IP	Q8N1F8	1099 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	C22orf23	Q9BZE7	217 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	NACAP1	Q9BZK3	213 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	NBPF3	Q9H094	633 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	INCENP	Q9NQS7	918 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	WDR70	Q9NW82	654 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	TMOD2	Q9NZR1	351 aa		11.13	□□□□□ -0.63
DDX55-208	ENST00000541259	DDTL	A6NHG4	134 aa	Predicted RBP	11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	EPB41L2	O43491	1005 aa	Known RBP	11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	EIF5B	O60841	1220 aa	Known RBP	11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	POTEI	P0CG38	1075 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	POTEJ	P0CG39	1038 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	SLURP2	P0DP57	97 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	C7	P10643	843 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	PLCD1	P51178	756 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	EAPP	Q56P03	285 aa	Predicted RBP	11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	DLK2	Q6UY11	383 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	USP50	Q70EL3	339 aa	Predicted RBP	11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	CDAN1	Q8IWY9	1227 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	KCNB2	Q92953	911 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	TMEM39B	Q9GZU3	492 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	NMRK2	Q9NPI5	230 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	CTNNA3	Q9UI47	895 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	SNX14	Q9Y5W7	946 aa		11.12	□□□□□ -0.63
DDX55-208	ENST00000541259	ZMYM6	O95789	1325 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	IQCA1L	A6NCM1	817 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	ZNF213	O14771	459 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	ENTPD3	O75355	529 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	POLR3D	P05423	398 aa	Predicted RBP	11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	VEGFA	P15692	232 aa	Predicted RBP	11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	PPARA	Q07869	468 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	COL9A3	Q14050	684 aa	Predicted RBP	11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	RASA3	Q14644	834 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	SBK1	Q52WX2	424 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	C12orf60	Q5U649	245 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	FKBP1C	Q5VVH2	108 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	STOX1	Q6ZVD7	989 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	TBC1D10C	Q8IV04	446 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	NKX2-3	Q8TAU0	364 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	FAM151A	Q8WW52	585 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	DYNLL2	Q96FJ2	89 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	DDRGK1	Q96HY6	314 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	TBC1D32	Q96NH3	1257 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	GGA3	Q9NZ52	723 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	PGAP2	Q9UHJ9	254 aa		11.11	□□□□□ -0.63
DDX55-208	ENST00000541259	RBM25	P49756	843 aa	Known RBP	11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	IMMT	Q16891	758 aa	Known RBP	11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	ADCK5	Q3MIX3	580 aa		11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	PRAMEF18	Q5VWM3	479 aa		11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	FAM83A	Q86UY5	434 aa		11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	PDCD7	Q8N8D1	485 aa	Known RBP	11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	KIF2C	Q99661	725 aa		11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	UPF2	Q9HAU5	1272 aa	Known RBP	11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	ARPP21	Q9UBL0	812 aa	Predicted RBP	11.1	□□□□□ -0.63
DDX55-208	ENST00000541259	ANAPC4	Q9UJX5	808 aa		11.1	□□□□□ -0.63
DDX55-208	ENST00000541259		E7EWF7	191 aa		11.09	□□□□□ -0.63
DDX55-208	ENST00000541259	MCC	P23508	829 aa		11.09	□□□□□ -0.63
DDX55-208	ENST00000541259	PNMA8A	Q86V59	439 aa	Predicted RBP	11.09	□□□□□ -0.63
DDX55-208	ENST00000541259	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.09	□□□□□ -0.63
DDX55-208	ENST00000541259	SLC44A5	Q8NCS7	719 aa		11.09	□□□□□ -0.63
DDX55-208	ENST00000541259	DCPS	Q96C86	337 aa	Known RBP	11.09	□□□□□ -0.63
DDX55-208	ENST00000541259	TEPSIN	Q96N21	525 aa		11.09	□□□□□ -0.63
DDX55-208	ENST00000541259	DEFB129	Q9H1M3	183 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms